Wall clock time and date at job start Mon Mar 30 2020 03:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48500 * 109.47456 * 270.00132 * 3 2 1 5 5 H 1.48497 * 109.47236 * 30.00332 * 3 2 1 6 6 H 1.48504 * 109.47355 * 149.99793 * 3 2 1 7 7 C 1.37876 * 120.00531 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00455 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99594 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.72677 * 60.56510 * 9 7 2 11 11 C 1.53405 * 109.69549 * 299.99288 * 9 7 2 12 12 O 1.42833 * 108.37737 * 175.62403 * 11 9 7 13 13 C 1.35842 * 117.83896 * 49.30900 * 12 11 9 14 14 C 1.39137 * 118.49860 * 162.71478 * 13 12 11 15 15 C 1.37970 * 120.21280 * 179.59691 * 14 13 12 16 16 C 1.38288 * 119.95646 * 359.96466 * 15 14 13 17 17 C 1.38102 * 119.98766 * 0.09127 * 16 15 14 18 18 C 1.38375 * 121.79826 * 342.46244 * 13 12 11 19 19 C 1.50762 * 121.40367 * 0.82654 * 18 13 12 20 20 H 0.97005 * 120.00193 * 359.97438 * 1 2 3 21 21 H 0.96703 * 113.99833 * 299.43159 * 10 9 7 22 22 H 1.09007 * 109.68214 * 55.90285 * 11 9 7 23 23 H 1.09000 * 109.68638 * 295.34789 * 11 9 7 24 24 H 1.08006 * 119.89425 * 359.57882 * 14 13 12 25 25 H 1.08008 * 120.02195 * 179.97438 * 15 14 13 26 26 H 1.08006 * 120.00668 * 180.11795 * 16 15 14 27 27 H 1.08000 * 119.84411 * 180.02562 * 17 16 15 28 28 H 1.09002 * 109.43464 * 102.11116 * 19 18 13 29 29 H 1.09000 * 109.43342 * 221.97204 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4379 -2.5865 -1.1713 11 6 0.3669 -2.5856 1.2511 12 8 -0.4091 -3.7821 1.1721 13 6 0.2390 -4.9406 0.8839 14 6 -0.4022 -6.1453 1.1554 15 6 0.2201 -7.3429 0.8690 16 6 1.4848 -7.3475 0.3097 17 6 2.1247 -6.1538 0.0399 18 6 1.5061 -4.9484 0.3278 19 6 2.2410 -3.6662 0.0298 20 1 -0.4851 0.8401 0.0004 21 1 -0.2244 -1.8856 -1.2436 22 1 -0.2953 -1.7206 1.2931 23 1 0.9934 -2.6125 2.1427 24 1 -1.3900 -6.1428 1.5920 25 1 -0.2802 -8.2762 1.0814 26 1 1.9719 -8.2846 0.0834 27 1 3.1122 -6.1601 -0.3973 28 1 2.9888 -3.4887 0.8028 29 1 2.7342 -3.7476 -0.9389 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306358991.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:10 Heat of formation + Delta-G solvation = -88.168310 kcal Electronic energy + Delta-G solvation = -15060.618087 eV Core-core repulsion = 12526.752867 eV Total energy + Delta-G solvation = -2533.865220 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.48255 -38.59392 -37.28986 -34.29219 -33.75637 -31.06730 -30.71456 -27.24474 -26.50566 -23.71028 -23.15293 -20.59636 -19.14668 -18.66555 -17.39897 -16.81388 -16.61809 -16.32749 -15.55472 -15.17090 -14.73631 -14.59850 -14.25907 -13.89430 -13.67071 -13.10219 -12.90992 -12.74112 -12.56455 -12.42664 -12.25136 -11.79986 -11.64318 -11.19433 -10.69490 -10.15475 -9.63806 -8.91198 -8.28845 -6.49120 0.48012 0.61619 1.40357 1.42580 1.52491 2.33764 2.62407 2.91012 2.99761 3.85962 3.97354 4.05355 4.19708 4.32609 4.44151 4.51467 4.68761 4.71524 4.83711 4.98095 5.15176 5.29049 5.35849 5.49863 5.64343 5.67262 5.76572 5.92921 6.08664 6.56056 6.69579 7.23610 7.34385 8.74370 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.058941 B = 0.008608 C = 0.007989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.937486 B = 3252.006516 C = 3503.804938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.029 3.971 3 Si 0.969 3.031 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.564 4.564 8 H 0.064 0.936 9 C 0.211 3.789 10 O -0.590 6.590 11 C 0.044 3.956 12 O -0.339 6.339 13 C 0.107 3.893 14 C -0.173 4.173 15 C -0.088 4.088 16 C -0.156 4.156 17 C -0.097 4.097 18 C -0.171 4.171 19 C -0.059 4.059 20 H 0.274 0.726 21 H 0.374 0.626 22 H 0.116 0.884 23 H 0.044 0.956 24 H 0.133 0.867 25 H 0.162 0.838 26 H 0.157 0.843 27 H 0.138 0.862 28 H 0.082 0.918 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 -9.583 2.276 10.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.171 4.171 3 Si 0.794 3.206 4 H -0.203 1.203 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.602 4.602 8 H 0.082 0.918 9 C 0.171 3.829 10 O -0.398 6.398 11 C -0.031 4.031 12 O -0.253 6.253 13 C 0.062 3.938 14 C -0.192 4.192 15 C -0.106 4.106 16 C -0.174 4.174 17 C -0.114 4.114 18 C -0.172 4.172 19 C -0.096 4.096 20 H 0.084 0.916 21 H 0.223 0.777 22 H 0.134 0.866 23 H 0.062 0.938 24 H 0.151 0.849 25 H 0.179 0.821 26 H 0.174 0.826 27 H 0.156 0.844 28 H 0.101 0.899 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.146 -9.952 2.215 10.419 hybrid contribution 0.074 1.931 0.023 1.933 sum 2.220 -8.021 2.238 8.618 Atomic orbital electron populations 1.69650 1.07016 1.28746 1.50168 1.25800 0.95884 1.02732 0.92672 0.85382 0.78663 0.78284 0.78265 1.20258 1.20339 1.19188 1.21895 0.94012 0.91490 1.52803 0.91816 1.19341 0.87809 0.93267 0.82462 1.86164 1.52585 1.55369 1.45697 1.23824 0.96406 0.84056 0.98778 1.85872 1.38461 1.15430 1.85549 1.19311 0.92052 0.86871 0.95560 1.20863 1.01979 0.90134 1.06176 1.21264 0.95111 0.97217 0.97005 1.21349 0.95908 0.98253 1.01903 1.21197 1.00329 0.91160 0.98763 1.20183 0.95857 0.97062 1.04087 1.20418 0.96946 0.90651 1.01554 0.91587 0.77701 0.86615 0.93781 0.84907 0.82059 0.82566 0.84420 0.89930 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.54 9.74 21.45 0.21 -48.33 15 2 C 0.03 1.53 5.22 84.66 0.44 1.97 15 3 Si 0.97 41.27 29.54 68.60 2.03 43.30 15 4 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 15 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 7 C -0.56 -30.12 8.24 25.60 0.21 -29.91 15 8 H 0.06 3.33 7.75 -2.91 -0.02 3.31 15 9 C 0.21 10.85 0.67 -11.38 -0.01 10.84 15 10 O -0.59 -32.65 12.61 -135.61 -1.71 -34.36 15 11 C 0.04 2.23 5.85 72.12 0.42 2.65 15 12 O -0.34 -16.45 10.06 -78.41 -0.79 -17.24 15 13 C 0.11 4.63 6.41 22.52 0.14 4.77 15 14 C -0.17 -5.99 9.94 22.42 0.22 -5.77 15 15 C -0.09 -2.38 10.04 22.22 0.22 -2.16 15 16 C -0.16 -4.15 10.04 22.25 0.22 -3.93 15 17 C -0.10 -3.14 9.67 22.30 0.22 -2.93 15 18 C -0.17 -7.06 5.67 -19.75 -0.11 -7.17 15 19 C -0.06 -2.63 4.82 29.89 0.14 -2.49 15 20 H 0.27 13.75 8.31 -92.70 -0.77 12.98 15 21 H 0.37 21.06 7.23 -74.06 -0.54 20.52 15 22 H 0.12 6.23 6.02 -2.38 -0.01 6.22 15 23 H 0.04 2.13 8.14 -2.39 -0.02 2.11 15 24 H 0.13 4.16 8.06 -2.91 -0.02 4.14 15 25 H 0.16 2.97 8.06 -2.91 -0.02 2.94 15 26 H 0.16 2.88 8.06 -2.91 -0.02 2.86 15 27 H 0.14 3.79 8.06 -2.91 -0.02 3.77 15 28 H 0.08 3.48 8.09 -2.39 -0.02 3.46 15 29 H 0.07 3.11 8.14 -2.39 -0.02 3.09 15 Total: -1.00 -60.07 245.74 2.49 -57.58 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.63 Total: 33.17 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 2.13 Total: -34.13 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.21 Total: -48.33 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -2.50 Total: -51.59 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -60.07 2.49 -57.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306358991.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.588 kcal (2) G-P(sol) polarization free energy of solvation -60.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds