Wall clock time and date at job start Mon Mar 30 2020 03:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.69140 * 299.43051 * 9 7 2 11 11 C 1.53403 * 109.70226 * 59.99648 * 9 7 2 12 12 O 1.42826 * 108.37493 * 184.41508 * 11 9 7 13 13 C 1.35840 * 117.86683 * 310.82369 * 12 11 9 14 14 C 1.39150 * 118.50685 * 197.16955 * 13 12 11 15 15 C 1.37969 * 120.21623 * 180.20090 * 14 13 12 16 16 C 1.38284 * 119.96028 * 359.97438 * 15 14 13 17 17 C 1.38102 * 119.98532 * 359.92833 * 16 15 14 18 18 C 1.38375 * 121.80372 * 17.22797 * 13 12 11 19 19 C 1.50768 * 121.40221 * 359.48232 * 18 13 12 20 20 H 1.09001 * 109.43808 * 257.79199 * 19 18 13 21 21 O 1.42895 * 109.43514 * 137.92080 * 19 18 13 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.68344 * 304.13801 * 11 9 7 24 24 H 1.08996 * 109.68373 * 64.69809 * 11 9 7 25 25 H 1.08001 * 119.88848 * 0.18213 * 14 13 12 26 26 H 1.08004 * 120.01705 * 179.97438 * 15 14 13 27 27 H 1.08004 * 120.00903 * 179.97438 * 16 15 14 28 28 H 1.07998 * 119.84642 * 179.97438 * 17 16 15 29 29 H 0.96708 * 114.00310 * 59.79242 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8791 -0.6893 -0.8933 11 6 4.0282 -0.4728 1.2514 12 8 5.4523 -0.3983 1.1724 13 6 6.1325 -1.5372 0.8801 14 6 7.4969 -1.5834 1.1490 15 6 8.2230 -2.7211 0.8624 16 6 7.5940 -3.8200 0.3065 17 6 6.2396 -3.7785 0.0401 18 6 5.5054 -2.6393 0.3261 19 6 4.0274 -2.6351 0.0285 20 1 3.5001 -3.1939 0.8017 21 8 3.7963 -3.2481 -1.2414 22 1 -0.4850 0.8401 0.0004 23 1 3.6097 0.5327 1.2946 24 1 3.7386 -1.0301 2.1423 25 1 7.9892 -0.7258 1.5833 26 1 9.2820 -2.7533 1.0720 27 1 8.1617 -4.7108 0.0814 28 1 5.7507 -4.6378 -0.3945 29 1 4.0988 -4.1650 -1.2965 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306558497.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:47 Heat of formation + Delta-G solvation = -81.344849 kcal Electronic energy + Delta-G solvation = -14986.802970 eV Core-core repulsion = 12453.233638 eV Total energy + Delta-G solvation = -2533.569332 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.75750 -38.53129 -38.02246 -35.38613 -33.28551 -31.72679 -31.16458 -27.11634 -26.33132 -23.78748 -23.14954 -20.85841 -19.37072 -19.23932 -17.90246 -17.54158 -16.84839 -16.26304 -16.02144 -15.30476 -15.19886 -14.87373 -14.58293 -14.43952 -13.85602 -13.21012 -13.12120 -12.82339 -12.63248 -12.07894 -12.01074 -11.86973 -11.61813 -11.29540 -10.86536 -10.80567 -9.77765 -9.11959 -8.40512 -6.45880 0.34228 0.47920 1.18683 1.28768 1.38376 2.19323 2.34220 2.77251 2.90289 3.47805 3.67405 3.78870 3.88639 4.17911 4.27529 4.33482 4.39989 4.48208 4.64660 4.69181 4.74564 5.06176 5.22377 5.36369 5.45009 5.52812 5.57654 5.90788 6.14569 6.45973 6.58965 6.92024 7.17269 8.75975 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.042303 B = 0.010335 C = 0.008666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.734904 B = 2708.465727 C = 3230.386190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.250 1.250 5 H -0.260 1.260 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.043 0.957 9 C -0.012 4.012 10 H 0.025 0.975 11 C 0.063 3.937 12 O -0.338 6.338 13 C 0.109 3.891 14 C -0.164 4.164 15 C -0.080 4.080 16 C -0.150 4.150 17 C -0.086 4.086 18 C -0.212 4.212 19 C 0.169 3.831 20 H 0.059 0.941 21 O -0.562 6.562 22 H 0.271 0.729 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.141 0.859 26 H 0.165 0.835 27 H 0.160 0.840 28 H 0.145 0.855 29 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.674 -5.983 2.744 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.177 4.177 3 Si 0.755 3.245 4 H -0.175 1.175 5 H -0.184 1.184 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.061 0.939 9 C -0.031 4.031 10 H 0.043 0.957 11 C -0.011 4.011 12 O -0.252 6.252 13 C 0.064 3.936 14 C -0.182 4.182 15 C -0.098 4.098 16 C -0.168 4.168 17 C -0.104 4.104 18 C -0.214 4.214 19 C 0.110 3.890 20 H 0.076 0.924 21 O -0.369 6.369 22 H 0.080 0.920 23 H 0.106 0.894 24 H 0.091 0.909 25 H 0.158 0.842 26 H 0.183 0.817 27 H 0.178 0.822 28 H 0.163 0.837 29 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 16.316 -5.106 2.650 17.301 hybrid contribution -0.518 0.300 -0.027 0.599 sum 15.798 -4.806 2.624 16.721 Atomic orbital electron populations 1.69993 1.07807 1.28378 1.51337 1.25786 0.95531 1.02440 0.93974 0.86151 0.79091 0.79610 0.79686 1.17502 1.18446 1.21034 1.20937 0.89410 0.93671 1.51022 0.93850 1.19644 0.95906 0.93215 0.94313 0.95698 1.23504 0.76274 1.01784 0.99546 1.85859 1.21351 1.32063 1.85968 1.19266 0.92916 0.85391 0.96047 1.20915 0.90526 1.01353 1.05451 1.21366 1.01063 0.91321 0.96034 1.21409 0.93881 1.00254 1.01218 1.21120 0.95144 0.96184 0.97945 1.20864 0.97711 0.96597 1.06179 1.20322 0.89108 0.94152 0.85396 0.92354 1.86669 1.85214 1.31371 1.33665 0.91981 0.89364 0.90869 0.84157 0.81721 0.82215 0.83714 0.76794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.20 13.96 21.45 0.30 -57.91 15 2 C 0.02 1.26 5.45 84.66 0.46 1.72 15 3 Si 0.93 44.89 24.42 68.60 1.67 46.56 15 4 H -0.25 -11.05 6.83 99.48 0.68 -10.37 15 5 H -0.26 -12.49 6.55 99.48 0.65 -11.84 15 6 H -0.28 -13.42 7.11 99.48 0.71 -12.71 15 7 C -0.51 -29.97 9.05 25.60 0.23 -29.74 15 8 H 0.04 2.79 7.99 -2.91 -0.02 2.77 15 9 C -0.01 -0.58 1.57 -11.38 -0.02 -0.60 15 10 H 0.02 1.36 7.25 -2.39 -0.02 1.34 15 11 C 0.06 2.86 5.80 72.12 0.42 3.27 15 12 O -0.34 -14.17 10.27 -91.75 -0.94 -15.11 15 13 C 0.11 4.02 6.47 22.52 0.15 4.16 15 14 C -0.16 -4.66 9.94 22.43 0.22 -4.44 15 15 C -0.08 -1.71 10.04 22.22 0.22 -1.49 15 16 C -0.15 -3.14 10.04 22.25 0.22 -2.92 15 17 C -0.09 -2.29 9.26 22.30 0.21 -2.08 15 18 C -0.21 -7.62 5.58 -19.75 -0.11 -7.73 15 19 C 0.17 7.15 2.94 29.89 0.09 7.24 15 20 H 0.06 2.47 8.09 -2.39 -0.02 2.45 15 21 O -0.56 -22.91 13.09 -148.98 -1.95 -24.86 15 22 H 0.27 15.65 8.31 -92.70 -0.77 14.88 15 23 H 0.09 4.05 3.28 -2.39 -0.01 4.04 15 24 H 0.07 3.12 8.14 -2.39 -0.02 3.10 15 25 H 0.14 3.48 8.06 -2.91 -0.02 3.46 15 26 H 0.17 2.17 8.06 -2.91 -0.02 2.14 15 27 H 0.16 2.12 8.06 -2.91 -0.02 2.10 15 28 H 0.15 2.97 6.74 -2.91 -0.02 2.95 15 29 H 0.38 10.74 7.47 -74.05 -0.55 10.18 15 Total: -1.00 -71.13 239.81 1.71 -69.42 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.54 Total: 14.48 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 2.09 Total: -32.59 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.30 Total: -57.91 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -2.89 Total: -39.97 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.67 Total: 46.56 kcal Total: -71.13 1.71 -69.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306558497.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.925 kcal (2) G-P(sol) polarization free energy of solvation -71.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds