Wall clock time and date at job start Mon Mar 30 2020 03:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.69778 * 300.00017 * 9 7 2 11 11 C 1.53401 * 109.70040 * 60.55296 * 9 7 2 12 12 O 1.42813 * 108.38827 * 184.36155 * 11 9 7 13 13 C 1.35844 * 117.87536 * 310.84355 * 12 11 9 14 14 C 1.39155 * 118.49342 * 196.99870 * 13 12 11 15 15 C 1.37970 * 120.21442 * 180.40663 * 14 13 12 16 16 C 1.38288 * 119.95534 * 0.02562 * 15 14 13 17 17 C 1.38107 * 119.98810 * 359.91203 * 16 15 14 18 18 C 1.38372 * 121.81113 * 17.27729 * 13 12 11 19 19 C 1.50768 * 121.40282 * 359.43964 * 18 13 12 20 20 H 1.08997 * 109.43286 * 137.88940 * 19 18 13 21 21 O 1.42901 * 109.40449 * 257.78457 * 19 18 13 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.68327 * 304.13539 * 11 9 7 24 24 H 1.09002 * 109.67998 * 64.68431 * 11 9 7 25 25 H 1.07997 * 119.88983 * 0.42410 * 14 13 12 26 26 H 1.07988 * 120.02189 * 179.97438 * 15 14 13 27 27 H 1.08003 * 120.00738 * 179.91759 * 16 15 14 28 28 H 1.07997 * 119.84414 * 180.02562 * 17 16 15 29 29 H 0.96698 * 113.99665 * 300.19754 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6233 -2.5609 0.8884 11 6 0.3771 -2.5917 -1.2579 12 8 -0.3993 -3.7878 -1.1798 13 6 0.2453 -4.9448 -0.8779 14 6 -0.3961 -6.1508 -1.1436 15 6 0.2224 -7.3470 -0.8434 16 6 1.4836 -7.3490 -0.2761 17 6 2.1237 -6.1540 -0.0122 18 6 1.5085 -4.9501 -0.3133 19 6 2.2411 -3.6665 -0.0151 20 1 2.7256 -3.7433 0.9583 21 8 3.2296 -3.4391 -1.0217 22 1 -0.4850 0.8401 0.0004 23 1 -0.2841 -1.7267 -1.3098 24 1 1.0111 -2.6235 -2.1440 25 1 -1.3811 -6.1504 -1.5865 26 1 -0.2783 -8.2811 -1.0505 27 1 1.9680 -8.2849 -0.0395 28 1 3.1087 -6.1582 0.4305 29 1 3.8919 -4.1405 -1.0880 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306558501.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:51 Heat of formation + Delta-G solvation = -87.872281 kcal Electronic energy + Delta-G solvation = -14947.464849 eV Core-core repulsion = 12413.612467 eV Total energy + Delta-G solvation = -2533.852383 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.57472 -38.35157 -37.81669 -35.30613 -32.87422 -31.31486 -31.02662 -27.11755 -26.03347 -23.85470 -23.23624 -20.70859 -19.02165 -18.46908 -17.91485 -17.27398 -16.54209 -16.18107 -15.88727 -15.45845 -14.89500 -14.65229 -14.47729 -13.85993 -13.68278 -13.04529 -12.96662 -12.78815 -12.59677 -12.21353 -12.05211 -11.77985 -11.37580 -11.07895 -10.65854 -10.51378 -9.79527 -9.05217 -8.19920 -6.31768 0.37678 0.54898 1.41335 1.43669 1.51863 2.38733 2.61012 2.84901 3.10551 3.70718 3.80166 3.89901 4.18567 4.29227 4.38020 4.49539 4.61032 4.70726 4.76970 4.91243 5.12184 5.29437 5.44179 5.53282 5.59291 5.62463 5.76831 5.95210 6.17048 6.66170 6.76510 7.02515 7.36969 8.87486 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.052601 B = 0.008718 C = 0.007790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.184524 B = 3210.808652 C = 3593.511939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.019 3.981 10 H 0.015 0.985 11 C 0.080 3.920 12 O -0.347 6.347 13 C 0.115 3.885 14 C -0.176 4.176 15 C -0.077 4.077 16 C -0.157 4.157 17 C -0.081 4.081 18 C -0.217 4.217 19 C 0.160 3.840 20 H 0.061 0.939 21 O -0.558 6.558 22 H 0.266 0.734 23 H 0.108 0.892 24 H 0.034 0.966 25 H 0.133 0.867 26 H 0.164 0.836 27 H 0.160 0.840 28 H 0.146 0.854 29 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -13.038 -0.773 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.791 3.209 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.000 4.000 10 H 0.033 0.967 11 C 0.005 3.995 12 O -0.261 6.261 13 C 0.069 3.931 14 C -0.194 4.194 15 C -0.095 4.095 16 C -0.175 4.175 17 C -0.099 4.099 18 C -0.219 4.219 19 C 0.102 3.898 20 H 0.079 0.921 21 O -0.364 6.364 22 H 0.075 0.925 23 H 0.125 0.875 24 H 0.052 0.948 25 H 0.151 0.849 26 H 0.181 0.819 27 H 0.178 0.822 28 H 0.164 0.836 29 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.793 -12.319 -0.898 12.663 hybrid contribution 0.544 0.899 0.126 1.058 sum 3.337 -11.419 -0.772 11.922 Atomic orbital electron populations 1.69948 1.07300 1.27914 1.51189 1.25870 0.95792 1.02908 0.94403 0.85476 0.78239 0.78221 0.78936 1.20718 1.19335 1.19739 1.21156 0.93407 0.90304 1.50527 0.91906 1.19306 0.93017 0.94030 0.93653 0.96710 1.23115 0.95032 0.83078 0.98269 1.85889 1.39170 1.15939 1.85151 1.19427 0.92197 0.86917 0.94545 1.20913 1.02192 0.90083 1.06251 1.21338 0.95087 0.97188 0.95893 1.21393 0.95836 0.98429 1.01829 1.21230 1.00254 0.90809 0.97619 1.20843 0.96695 0.97912 1.06415 1.20508 0.88459 0.90626 0.90209 0.92077 1.86722 1.41664 1.49475 1.58515 0.92470 0.87452 0.94775 0.84879 0.81888 0.82212 0.83647 0.77480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.03 11.36 21.45 0.24 -53.79 15 2 C 0.01 0.48 5.30 84.66 0.45 0.93 15 3 Si 0.97 44.16 29.54 68.60 2.03 46.19 15 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 7 C -0.52 -29.20 8.12 25.60 0.21 -29.00 15 8 H 0.06 3.53 7.33 -2.91 -0.02 3.51 15 9 C 0.02 0.99 2.18 -11.38 -0.02 0.97 15 10 H 0.01 0.88 8.14 -2.39 -0.02 0.86 15 11 C 0.08 4.23 6.12 72.12 0.44 4.67 15 12 O -0.35 -17.07 10.27 -91.79 -0.94 -18.02 15 13 C 0.11 4.80 6.47 22.52 0.15 4.94 15 14 C -0.18 -5.79 9.94 22.43 0.22 -5.56 15 15 C -0.08 -1.89 10.04 22.22 0.22 -1.67 15 16 C -0.16 -3.65 10.04 22.25 0.22 -3.42 15 17 C -0.08 -2.31 9.64 22.30 0.22 -2.10 15 18 C -0.22 -8.40 5.34 -19.75 -0.11 -8.50 15 19 C 0.16 6.98 3.05 29.89 0.09 7.07 15 20 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 21 O -0.56 -23.14 11.99 -148.98 -1.79 -24.93 15 22 H 0.27 14.74 8.31 -92.71 -0.77 13.97 15 23 H 0.11 6.23 6.07 -2.38 -0.01 6.21 15 24 H 0.03 1.83 7.88 -2.39 -0.02 1.81 15 25 H 0.13 4.00 8.06 -2.91 -0.02 3.98 15 26 H 0.16 2.63 8.06 -2.92 -0.02 2.60 15 27 H 0.16 2.41 8.06 -2.91 -0.02 2.39 15 28 H 0.15 3.24 8.06 -2.91 -0.02 3.22 15 29 H 0.38 11.14 9.05 -74.06 -0.67 10.47 15 Total: -1.00 -67.28 247.87 2.12 -65.15 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.49 Total: 17.06 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 2.09 Total: -31.67 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.24 Total: -53.79 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -2.73 Total: -42.94 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.28 2.12 -65.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306558501.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.718 kcal (2) G-P(sol) polarization free energy of solvation -67.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds