Wall clock time and date at job start Mon Mar 30 2020 03:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99948 * 2 1 4 4 H 1.48495 * 109.47243 * 239.99587 * 3 2 1 5 5 H 1.48507 * 109.46910 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47136 * 119.99300 * 3 2 1 7 7 C 1.37868 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00136 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00029 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.69219 * 60.56530 * 9 7 2 11 11 C 1.53404 * 109.69810 * 299.99808 * 9 7 2 12 12 O 1.42825 * 108.37548 * 175.55689 * 11 9 7 13 13 C 1.35844 * 117.86850 * 49.12436 * 12 11 9 14 14 C 1.39147 * 118.49925 * 163.00269 * 13 12 11 15 15 C 1.37970 * 120.21557 * 179.79798 * 14 13 12 16 16 C 1.38290 * 119.95571 * 0.02562 * 15 14 13 17 17 C 1.38098 * 119.98887 * 0.08052 * 16 15 14 18 18 C 1.38379 * 121.80702 * 342.94749 * 13 12 11 19 19 C 1.50772 * 121.40808 * 0.30248 * 18 13 12 20 20 H 1.08997 * 109.43583 * 222.20570 * 19 18 13 21 21 O 1.42903 * 109.40446 * 102.30757 * 19 18 13 22 22 H 0.97001 * 119.99493 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.68489 * 55.84137 * 11 9 7 24 24 H 1.08993 * 109.68845 * 295.28089 * 11 9 7 25 25 H 1.07997 * 119.88937 * 359.77948 * 14 13 12 26 26 H 1.07998 * 120.02353 * 179.97438 * 15 14 13 27 27 H 1.08002 * 120.00529 * 180.02562 * 16 15 14 28 28 H 1.08001 * 119.84524 * 180.02562 * 17 16 15 29 29 H 0.96698 * 113.99786 * 59.81618 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6310 -2.5653 -0.8934 11 6 0.3667 -2.5856 1.2510 12 8 -0.4103 -3.7813 1.1711 13 6 0.2356 -4.9400 0.8784 14 6 -0.4088 -6.1445 1.1432 15 6 0.2128 -7.3423 0.8560 16 6 1.4806 -7.3473 0.3036 17 6 2.1240 -6.1539 0.0415 18 6 1.5051 -4.9483 0.3280 19 6 2.2410 -3.6664 0.0305 20 1 2.7350 -3.7480 -0.9376 21 8 3.2195 -3.4341 1.0457 22 1 -0.4849 0.8401 -0.0004 23 1 -0.2947 -1.7203 1.2935 24 1 0.9931 -2.6137 2.1425 25 1 -1.3986 -6.1418 1.5752 26 1 -0.2900 -8.2754 1.0631 27 1 1.9677 -8.2845 0.0780 28 1 3.1139 -6.1605 -0.3904 29 1 3.8811 -4.1352 1.1220 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306558503.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:54 Heat of formation + Delta-G solvation = -66.995482 kcal Electronic energy + Delta-G solvation = -14948.075280 eV Core-core repulsion = 12415.128183 eV Total energy + Delta-G solvation = -2532.947097 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.02351 -36.87991 -36.15888 -33.32349 -31.24873 -29.67306 -29.59278 -25.14484 -24.32645 -22.29440 -21.81281 -19.00623 -17.33335 -16.81781 -16.17931 -15.53886 -14.93655 -14.42045 -14.27331 -14.01594 -13.32856 -13.06489 -12.90020 -12.11918 -11.86299 -11.63325 -11.44890 -10.95159 -10.88721 -10.58834 -10.25401 -9.98357 -9.49506 -9.28905 -8.84196 -8.52012 -8.46147 -7.58156 -6.11459 -4.15229 1.66372 1.87830 3.30021 3.34347 3.37851 4.09320 4.27615 4.41436 5.13657 5.18611 5.23384 5.31193 5.37408 5.61348 5.82545 5.96904 6.15028 6.27777 6.40079 6.54301 6.67135 6.79201 6.84483 7.04919 7.19475 7.37117 7.58000 7.88501 8.11917 8.32980 8.49431 8.88956 9.49199 10.96541 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.052633 B = 0.008723 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.856934 B = 3209.040634 C = 3592.803875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.497 4.497 8 H 0.067 0.933 9 C 0.024 3.976 10 H 0.050 0.950 11 C 0.061 3.939 12 O -0.327 6.327 13 C 0.166 3.834 14 C -0.169 4.169 15 C -0.088 4.088 16 C -0.174 4.174 17 C -0.082 4.082 18 C -0.198 4.198 19 C 0.152 3.848 20 H 0.055 0.945 21 O -0.540 6.540 22 H 0.265 0.735 23 H 0.137 0.863 24 H 0.046 0.954 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 -10.665 0.977 10.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.006 3.994 10 H 0.068 0.932 11 C -0.012 4.012 12 O -0.240 6.240 13 C 0.118 3.882 14 C -0.188 4.188 15 C -0.107 4.107 16 C -0.193 4.193 17 C -0.100 4.100 18 C -0.199 4.199 19 C 0.094 3.906 20 H 0.073 0.927 21 O -0.342 6.342 22 H 0.075 0.925 23 H 0.154 0.846 24 H 0.065 0.935 25 H 0.142 0.858 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.460 -9.908 1.097 10.075 hybrid contribution 0.950 0.357 -0.166 1.028 sum 2.410 -9.551 0.931 9.894 Atomic orbital electron populations 1.69798 1.05928 1.27146 1.50805 1.25048 0.94986 0.99530 0.94909 0.86489 0.79438 0.82390 0.78738 1.20211 1.21275 1.20119 1.20904 0.93499 0.89002 1.50152 0.91434 1.19428 0.92299 0.92575 0.95146 0.93236 1.23651 0.96054 0.82603 0.98926 1.85980 1.38689 1.15332 1.83990 1.18912 0.90600 0.87118 0.91557 1.20615 1.01560 0.90288 1.06310 1.20813 0.94997 0.96856 0.97989 1.20835 0.96231 0.97488 1.04712 1.20899 0.99102 0.91701 0.98310 1.20911 0.96602 0.97431 1.04971 1.20838 0.89051 0.91160 0.89559 0.92742 1.86806 1.41599 1.47580 1.58215 0.92509 0.84556 0.93535 0.85750 0.86168 0.86622 0.86537 0.80260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.24 11.32 55.43 0.63 -24.61 15 2 C 0.06 1.53 5.30 -17.82 -0.09 1.44 15 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.50 -13.62 8.12 -34.44 -0.28 -13.90 15 8 H 0.07 1.86 7.35 -52.49 -0.39 1.47 15 9 C 0.02 0.61 2.19 -91.52 -0.20 0.41 15 10 H 0.05 1.37 8.14 -51.93 -0.42 0.94 15 11 C 0.06 1.53 6.12 37.37 0.23 1.76 15 12 O -0.33 -7.64 10.27 -19.25 -0.20 -7.84 15 13 C 0.17 3.43 6.47 -39.19 -0.25 3.18 15 14 C -0.17 -2.92 9.94 -39.34 -0.39 -3.31 15 15 C -0.09 -1.28 10.04 -39.66 -0.40 -1.68 15 16 C -0.17 -2.49 10.04 -39.61 -0.40 -2.89 15 17 C -0.08 -1.31 9.64 -39.53 -0.38 -1.69 15 18 C -0.20 -3.89 5.34 -104.44 -0.56 -4.44 15 19 C 0.15 3.28 3.04 -27.81 -0.08 3.19 15 20 H 0.05 1.12 8.14 -51.93 -0.42 0.69 15 21 O -0.54 -11.23 12.00 -35.23 -0.42 -11.65 15 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 23 H 0.14 3.68 6.02 -51.93 -0.31 3.37 15 24 H 0.05 1.18 7.87 -51.93 -0.41 0.77 15 25 H 0.12 1.94 8.06 -52.49 -0.42 1.52 15 26 H 0.12 1.34 8.06 -52.49 -0.42 0.92 15 27 H 0.12 1.30 8.06 -52.49 -0.42 0.88 15 28 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 29 H 0.35 5.48 9.05 45.56 0.41 5.89 15 LS Contribution 247.80 15.07 3.73 3.73 Total: -1.00 -29.65 247.80 -6.46 -36.11 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -2.37 Total: 6.00 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.81 Total: -17.93 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.63 Total: -24.61 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.62 Total: -19.49 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.65 -6.46 -36.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306558503.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.886 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds