Wall clock time and date at job start Mon Mar 30 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39865 * 120.09345 * 260.27810 * 3 2 1 5 5 C 1.37575 * 119.94703 * 179.69589 * 4 3 2 6 6 C 1.39265 * 120.14171 * 0.60591 * 5 4 3 7 7 N 1.39178 * 119.90899 * 179.69920 * 6 5 4 8 8 C 1.46502 * 119.99974 * 359.97252 * 7 6 5 9 9 C 1.50698 * 109.47365 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99946 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99812 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00426 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99769 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47500 * 90.00319 * 13 11 9 15 15 H 1.48502 * 109.46887 * 210.00062 * 13 11 9 16 16 H 1.48499 * 109.47202 * 329.99867 * 13 11 9 17 17 C 1.39042 * 120.18949 * 359.66783 * 6 5 4 18 18 C 1.37984 * 120.05018 * 0.02817 * 17 6 5 19 19 F 1.35096 * 120.06733 * 179.97438 * 18 17 6 20 20 H 1.08005 * 120.02737 * 359.97438 * 4 3 2 21 21 H 1.08002 * 119.93196 * 180.27955 * 5 4 3 22 22 H 0.96994 * 120.00498 * 179.97438 * 7 6 5 23 23 H 1.09008 * 109.47174 * 300.00724 * 8 7 6 24 24 H 1.08994 * 109.47156 * 59.99915 * 8 7 6 25 25 H 0.96996 * 120.00489 * 179.97438 * 12 11 9 26 26 H 1.07999 * 119.97393 * 180.02562 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 0.2053 1.1927 5 6 4.6449 0.1991 1.1904 6 6 5.3413 0.0020 0.0005 7 7 6.7331 0.0028 0.0027 8 6 7.4635 0.2115 1.2553 9 6 8.9456 0.1679 0.9859 10 1 9.3072 0.0018 -0.0180 11 6 9.8398 0.3411 2.0210 12 7 9.3994 0.5449 3.2434 13 14 11.6769 0.2878 1.6870 14 1 12.1621 1.6547 1.3688 15 1 12.3841 -0.2211 2.8896 16 1 11.9450 -0.6128 0.5371 17 6 4.6501 -0.1964 -1.1895 18 6 3.2703 -0.1979 -1.1952 19 9 2.5983 -0.3900 -2.3513 20 1 2.7311 0.3636 2.1157 21 1 5.1861 0.3527 2.1123 22 1 7.2195 -0.1347 -0.8252 23 1 7.1988 1.1831 1.6728 24 1 7.1996 -0.5727 1.9648 25 1 10.0284 0.6664 3.9716 26 1 5.1936 -0.3493 -2.1101 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306761509.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:07 Heat of formation + Delta-G solvation = -15.863567 kcal Electronic energy + Delta-G solvation = -13398.597234 eV Core-core repulsion = 10776.699829 eV Total energy + Delta-G solvation = -2621.897405 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.02930 -40.38335 -37.82858 -36.44036 -34.59788 -31.89955 -30.96705 -28.54106 -25.12246 -24.15040 -22.82857 -20.02550 -19.21764 -18.15837 -17.65166 -16.77270 -16.62304 -16.41354 -15.33711 -15.16170 -15.05645 -14.66525 -14.56086 -14.30456 -14.12855 -13.55562 -13.17415 -13.11955 -12.71108 -12.66570 -12.27809 -12.08769 -11.40850 -11.11564 -10.56074 -9.85472 -8.38894 -8.27967 -6.40012 -0.06330 0.32212 1.45418 1.46749 1.56426 1.64727 1.99171 2.34383 2.62641 2.86349 2.97295 3.09142 3.26341 3.84929 4.20643 4.34944 4.51493 4.88398 5.00180 5.07489 5.29659 5.33708 5.34485 5.52812 5.76280 5.92042 6.34693 6.50752 6.69713 7.01750 7.32081 8.82908 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.066020 B = 0.005354 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.012853 B = 5228.882616 C = 5637.750878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.289 3.711 3 C -0.159 4.159 4 C 0.026 3.974 5 C -0.221 4.221 6 C 0.275 3.725 7 N -0.708 5.708 8 C 0.260 3.740 9 C -0.558 4.558 10 H 0.072 0.928 11 C 0.014 3.986 12 N -0.922 5.922 13 Si 0.969 3.031 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.264 1.264 17 C -0.243 4.243 18 C 0.195 3.805 19 F -0.137 7.137 20 H 0.162 0.838 21 H 0.132 0.868 22 H 0.405 0.595 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.269 0.731 26 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 -0.941 -5.661 7.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.024 4.024 3 C -0.166 4.166 4 C 0.005 3.995 5 C -0.244 4.244 6 C 0.161 3.839 7 N -0.328 5.328 8 C 0.138 3.862 9 C -0.596 4.596 10 H 0.090 0.910 11 C -0.186 4.186 12 N -0.560 5.560 13 Si 0.794 3.206 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.188 1.188 17 C -0.267 4.267 18 C 0.173 3.827 19 F -0.115 7.115 20 H 0.180 0.820 21 H 0.150 0.850 22 H 0.241 0.759 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.077 0.923 26 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.952 -0.888 -5.326 8.803 hybrid contribution 1.459 -0.047 -0.360 1.503 sum -5.493 -0.935 -5.685 7.961 Atomic orbital electron populations 1.81194 1.12944 1.12616 1.08497 1.25525 0.92387 0.91836 0.92656 1.15666 0.83848 1.22336 0.94759 1.20859 0.92539 0.89993 0.96145 1.20786 0.94157 1.11731 0.97759 1.18087 0.84502 0.87863 0.93415 1.45379 1.02148 1.73102 1.12195 1.18840 0.90521 0.95085 0.81760 1.21580 0.91486 1.51082 0.95468 0.90962 1.25765 1.04066 0.94188 0.94612 1.70029 1.36751 1.48641 1.00608 0.85382 0.78780 0.78580 0.77887 1.20002 1.21015 1.18772 1.20367 0.91501 1.15759 0.99042 1.17204 0.89332 0.96387 0.79810 1.91499 1.80610 1.92037 1.47384 0.82007 0.85017 0.75886 0.97313 0.97295 0.92250 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -15.26 18.54 19.00 0.35 -14.91 15 2 C 0.29 8.23 14.97 88.33 1.32 9.55 15 3 C -0.16 -4.08 5.75 -21.20 -0.12 -4.20 15 4 C 0.03 0.62 9.74 22.51 0.22 0.84 15 5 C -0.22 -6.31 9.28 22.36 0.21 -6.10 15 6 C 0.28 8.20 6.65 38.42 0.26 8.45 15 7 N -0.71 -24.37 5.70 -343.14 -1.96 -26.33 15 8 C 0.26 11.53 4.65 85.63 0.40 11.93 15 9 C -0.56 -27.15 9.28 25.60 0.24 -26.91 15 10 H 0.07 3.31 7.60 -2.91 -0.02 3.29 15 11 C 0.01 0.72 5.46 84.65 0.46 1.18 15 12 N -0.92 -49.58 13.29 21.45 0.28 -49.30 15 13 Si 0.97 39.54 29.54 68.60 2.03 41.57 15 14 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 15 H -0.28 -11.57 7.11 99.48 0.71 -10.86 15 16 H -0.26 -10.28 7.11 99.48 0.71 -9.58 15 17 C -0.24 -6.19 9.85 22.40 0.22 -5.97 15 18 C 0.20 5.08 7.27 22.65 0.16 5.25 15 19 F -0.14 -3.67 16.81 44.97 0.76 -2.91 15 20 H 0.16 2.96 8.06 -2.91 -0.02 2.94 15 21 H 0.13 4.08 6.69 -2.91 -0.02 4.07 15 22 H 0.41 12.56 8.32 -92.71 -0.77 11.79 15 23 H 0.01 0.43 7.93 -2.38 -0.02 0.41 15 24 H 0.01 0.44 7.93 -2.39 -0.02 0.42 15 25 H 0.27 13.68 8.31 -92.71 -0.77 12.91 15 26 H 0.16 3.36 8.06 -2.91 -0.02 3.33 15 Total: -1.00 -54.70 250.99 5.28 -49.42 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.45 Total: 8.45 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 3.37 Total: -5.98 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -1.32 Total: -90.54 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.76 Total: -2.91 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -54.70 5.28 -49.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306761509.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.552 kcal (2) G-P(sol) polarization free energy of solvation -54.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds