Wall clock time and date at job start Mon Mar 30 2020 02:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00133 * 2 1 4 4 H 1.48502 * 109.46762 * 269.99761 * 3 2 1 5 5 H 1.48497 * 109.46828 * 29.99693 * 3 2 1 6 6 H 1.48502 * 109.46973 * 150.00042 * 3 2 1 7 7 C 1.37877 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99945 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00102 * 179.97438 * 7 2 1 10 10 H 1.08993 * 110.55238 * 302.88230 * 9 7 2 11 11 O 1.44577 * 110.77066 * 65.72516 * 9 7 2 12 12 C 1.43745 * 106.86750 * 158.50927 * 11 9 7 13 13 O 1.42905 * 109.88011 * 214.17096 * 12 11 9 14 14 C 1.53003 * 109.88036 * 93.17014 * 12 11 9 15 15 O 1.42896 * 109.46996 * 61.70764 * 14 12 11 16 16 C 1.54106 * 107.42168 * 333.66868 * 12 11 9 17 17 H 1.08997 * 110.48214 * 120.76235 * 16 12 11 18 18 O 1.42901 * 110.48811 * 243.27626 * 16 12 11 19 19 C 1.54810 * 104.18485 * 1.95647 * 16 12 11 20 20 H 1.08994 * 110.90515 * 262.64486 * 19 16 12 21 21 O 1.42901 * 110.90474 * 139.08049 * 19 16 12 22 22 H 0.96998 * 120.00047 * 0.02562 * 1 2 3 23 23 H 0.96696 * 114.00036 * 298.29317 * 13 12 11 24 24 H 1.09000 * 109.46993 * 181.70766 * 14 12 11 25 25 H 1.08998 * 109.46900 * 301.70778 * 14 12 11 26 26 H 0.96696 * 114.00015 * 180.02562 * 15 14 12 27 27 H 0.96698 * 113.99901 * 179.97438 * 18 16 12 28 28 H 0.96699 * 113.99761 * 180.02562 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8938 -0.6406 -0.8576 11 8 4.0247 -0.6376 1.2317 12 6 5.3694 -1.1232 1.3804 13 8 5.6627 -1.3259 2.7643 14 6 6.3550 -0.1175 0.7819 15 8 6.2562 1.1225 1.4852 16 6 5.4628 -2.4623 0.6234 17 1 6.2233 -2.4079 -0.1555 18 8 5.7512 -3.5296 1.5288 19 6 4.0572 -2.6448 0.0007 20 1 3.4384 -3.2935 0.6206 21 8 4.1518 -3.1548 -1.3309 22 1 -0.4850 0.8400 -0.0004 23 1 5.6164 -0.5209 3.2981 24 1 7.3695 -0.5059 0.8709 25 1 6.1179 0.0416 -0.2700 26 1 6.8539 1.8088 1.1584 27 1 5.8207 -4.3963 1.1057 28 1 3.2970 -3.2859 -1.7634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306845751.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:43 Heat of formation + Delta-G solvation = -268.146553 kcal Electronic energy + Delta-G solvation = -16387.022312 eV Core-core repulsion = 13402.210636 eV Total energy + Delta-G solvation = -2984.811676 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.087 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.28316 -38.17741 -37.21056 -36.91779 -36.12319 -34.70891 -31.04641 -30.65395 -27.94844 -24.82270 -22.44831 -21.97971 -19.68536 -18.76682 -18.52022 -18.46946 -17.50858 -16.95240 -16.59905 -16.16838 -15.75074 -15.59364 -14.72557 -14.56733 -14.18092 -13.77405 -13.53041 -13.28486 -12.97470 -12.90904 -12.45009 -12.15634 -11.78451 -11.57372 -11.12040 -11.10151 -10.85027 -10.76205 -10.23969 -8.44175 -6.60240 1.32331 1.38118 1.68149 2.36389 2.50747 2.74057 2.91563 3.22243 3.34685 3.53389 3.82991 3.92390 4.05106 4.10720 4.28569 4.37928 4.58393 4.76933 4.96264 5.33737 6.03638 6.13725 6.52431 6.55970 6.68830 6.80117 6.84110 7.17151 8.68550 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.026996 B = 0.014822 C = 0.011119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.941852 B = 1888.611154 C = 2517.685207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.033 3.967 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.213 1.213 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.152 3.848 10 H 0.046 0.954 11 O -0.400 6.400 12 C 0.264 3.736 13 O -0.540 6.540 14 C 0.050 3.950 15 O -0.578 6.578 16 C 0.105 3.895 17 H 0.108 0.892 18 O -0.548 6.548 19 C 0.061 3.939 20 H 0.062 0.938 21 O -0.558 6.558 22 H 0.271 0.729 23 H 0.387 0.613 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.400 0.600 27 H 0.395 0.605 28 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.762 -0.803 -1.669 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.168 4.168 3 Si 0.753 3.247 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.135 1.135 7 C -0.571 4.571 8 H 0.067 0.933 9 C 0.096 3.904 10 H 0.064 0.936 11 O -0.323 6.323 12 C 0.184 3.816 13 O -0.347 6.347 14 C -0.029 4.029 15 O -0.386 6.386 16 C 0.045 3.955 17 H 0.125 0.875 18 O -0.355 6.355 19 C 0.000 4.000 20 H 0.080 0.920 21 O -0.367 6.367 22 H 0.080 0.920 23 H 0.236 0.764 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.251 0.749 27 H 0.245 0.755 28 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 14.771 -1.020 -0.827 14.830 hybrid contribution -0.698 0.963 -0.689 1.374 sum 14.073 -0.058 -1.516 14.155 Atomic orbital electron populations 1.70023 1.08291 1.28762 1.49606 1.25917 0.95446 1.03603 0.91861 0.86020 0.82026 0.77667 0.79006 1.19372 1.22003 1.13454 1.21063 0.89356 0.93883 1.52817 0.93298 1.21576 0.93749 0.90956 0.84071 0.93635 1.89337 1.27329 1.70695 1.44895 1.22953 0.84606 0.90696 0.83355 1.86607 1.90728 1.38431 1.18945 1.23068 0.98841 0.85208 0.95790 1.86449 1.67440 1.23389 1.61352 1.22769 0.95154 0.86833 0.90742 0.87467 1.86612 1.93433 1.18954 1.36515 1.23828 0.96295 0.95132 0.84699 0.92002 1.86204 1.36777 1.86714 1.26996 0.92033 0.76355 0.89422 0.91930 0.74923 0.75524 0.75111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.96 21.45 0.30 -57.03 15 2 C 0.03 1.93 5.47 84.65 0.46 2.39 15 3 Si 0.93 44.78 27.06 68.60 1.86 46.64 15 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 15 6 H -0.21 -10.00 5.61 99.48 0.56 -9.45 15 7 C -0.53 -30.21 9.40 25.60 0.24 -29.97 15 8 H 0.05 2.98 8.01 -2.91 -0.02 2.95 15 9 C 0.15 7.11 2.20 30.53 0.07 7.18 15 10 H 0.05 2.07 7.46 -2.39 -0.02 2.05 15 11 O -0.40 -19.02 8.26 -122.57 -1.01 -20.03 15 12 C 0.26 10.02 1.43 30.97 0.04 10.07 15 13 O -0.54 -20.83 12.34 -117.07 -1.44 -22.27 15 14 C 0.05 1.45 6.16 71.98 0.44 1.89 15 15 O -0.58 -16.67 13.08 -130.79 -1.71 -18.38 15 16 C 0.11 3.61 3.82 31.59 0.12 3.73 15 17 H 0.11 3.03 7.64 -2.39 -0.02 3.01 15 18 O -0.55 -17.99 12.44 -128.43 -1.60 -19.59 15 19 C 0.06 2.38 3.66 31.89 0.12 2.50 15 20 H 0.06 2.66 7.99 -2.39 -0.02 2.64 15 21 O -0.56 -18.72 13.42 -148.98 -2.00 -20.72 15 22 H 0.27 15.64 8.31 -92.71 -0.77 14.87 15 23 H 0.39 13.14 8.59 -74.06 -0.64 12.50 15 24 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15 26 H 0.40 6.84 9.12 -74.06 -0.68 6.17 15 27 H 0.39 8.93 9.12 -74.06 -0.68 8.26 15 28 H 0.40 11.78 9.12 -74.06 -0.68 11.10 15 Total: -1.00 -75.04 244.15 -5.69 -80.74 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -1.58 Total: 32.87 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 1.50 Total: -2.22 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.30 Total: -57.03 kcal Atomic # 8 Polarization: -93.23 SS G_CDS: -7.76 Total: -101.00 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.86 Total: 46.64 kcal Total: -75.04 -5.69 -80.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306845751.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.411 kcal (2) G-P(sol) polarization free energy of solvation -75.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds