Wall clock time and date at job start Mon Mar 30 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30470 * 125.03804 * 2 1 4 4 C 1.34326 * 109.76499 * 180.14451 * 3 2 1 5 5 C 1.40226 * 107.29625 * 359.63168 * 4 3 2 6 6 N 1.35822 * 125.03707 * 179.72965 * 2 1 3 7 7 H 0.97005 * 126.44258 * 0.02562 * 6 2 1 8 8 C 1.39099 * 120.00641 * 180.23864 * 5 4 3 9 9 F 1.35096 * 119.55045 * 179.97438 * 8 5 4 10 10 C 1.38712 * 120.89364 * 359.97438 * 8 5 4 11 11 C 1.37593 * 121.37025 * 359.97438 * 10 8 5 12 12 C 1.40793 * 120.17354 * 0.02562 * 11 10 8 13 13 C 1.40642 * 120.64874 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99800 * 156.24701 * 13 12 11 15 15 C 1.39999 * 120.00387 * 336.24451 * 13 12 11 16 16 N 1.30848 * 119.99864 * 341.36356 * 15 13 12 17 17 Si 1.86799 * 120.00389 * 161.36145 * 15 13 12 18 18 H 1.48501 * 109.46828 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47064 * 119.99997 * 17 15 13 20 20 H 1.48494 * 109.47428 * 240.00300 * 17 15 13 21 21 H 1.08994 * 109.47537 * 270.26573 * 1 2 3 22 22 H 1.08997 * 109.46839 * 30.27105 * 1 2 3 23 23 H 1.09003 * 109.46874 * 150.26591 * 1 2 3 24 24 H 1.07999 * 119.31688 * 179.97438 * 10 8 5 25 25 H 1.07995 * 119.91372 * 180.02562 * 11 10 8 26 26 H 0.97004 * 120.00259 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2561 1.0682 0.0000 4 6 3.5519 0.7144 -0.0032 5 6 3.6014 -0.6870 0.0033 6 7 2.2868 -1.1121 0.0052 7 1 1.9787 -2.0319 0.0092 8 6 4.8298 -1.3396 0.0068 9 9 4.8668 -2.6900 0.0136 10 6 6.0172 -0.6226 0.0034 11 6 6.0232 0.7533 -0.0040 12 6 4.8090 1.4662 -0.0078 13 6 4.8034 2.8725 -0.0159 14 1 3.9451 3.4069 -0.3955 15 6 5.9104 3.5798 0.4681 16 7 6.7771 2.9851 1.2473 17 14 6.1502 5.3727 0.0016 18 1 5.0388 5.8070 -0.8824 19 1 6.1598 6.2068 1.2302 20 1 7.4422 5.5296 -0.7133 21 1 -0.3634 0.0048 1.0276 22 1 -0.3633 0.8875 -0.5180 23 1 -0.3633 -0.8924 -0.5097 24 1 6.9567 -1.1554 0.0067 25 1 6.9615 1.2878 -0.0069 26 1 7.5443 3.4750 1.5825 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306887852.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:41 Heat of formation + Delta-G solvation = -13.126715 kcal Electronic energy + Delta-G solvation = -14210.423893 eV Core-core repulsion = 11588.645167 eV Total energy + Delta-G solvation = -2621.778726 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.26597 -42.54366 -37.87881 -35.37848 -33.55048 -31.95605 -30.90663 -28.27946 -26.66626 -23.10558 -22.56274 -21.54854 -19.73712 -18.59417 -17.85401 -16.93845 -16.52731 -16.36836 -15.74405 -15.56533 -15.08084 -14.32670 -14.01114 -13.70578 -13.47671 -13.27226 -12.97944 -12.85818 -12.52895 -12.09395 -11.83105 -11.79288 -11.21078 -10.98570 -10.76055 -9.08144 -8.98142 -8.74563 -6.32277 0.37143 0.97390 1.39737 1.48718 1.57244 2.09199 2.16926 2.20885 2.53737 3.50949 3.59940 3.96785 4.12229 4.39679 4.56240 4.70630 4.80676 4.94032 4.95320 5.11335 5.14840 5.45476 5.79647 5.82631 5.92549 6.14034 6.46454 6.67939 6.70647 6.83204 7.36020 8.10951 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.029347 B = 0.010382 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.872738 B = 2696.260783 C = 3567.251528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.215 3.785 3 N -0.507 5.507 4 C -0.052 4.052 5 C 0.048 3.952 6 N -0.589 5.589 7 H 0.428 0.572 8 C -0.100 4.100 9 F -0.172 7.172 10 C -0.075 4.075 11 C -0.225 4.225 12 C 0.126 3.874 13 C -0.435 4.435 14 H 0.080 0.920 15 C 0.034 3.966 16 N -0.788 5.788 17 Si 0.994 3.006 18 H -0.259 1.259 19 H -0.260 1.260 20 H -0.254 1.254 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.129 0.871 25 H 0.126 0.874 26 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 -1.902 -1.533 5.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 N -0.227 5.227 4 C -0.172 4.172 5 C -0.064 4.064 6 N -0.203 5.203 7 H 0.268 0.732 8 C -0.124 4.124 9 F -0.152 7.152 10 C -0.095 4.095 11 C -0.247 4.247 12 C 0.122 3.878 13 C -0.461 4.461 14 H 0.098 0.902 15 C -0.186 4.186 16 N -0.410 5.410 17 Si 0.813 3.187 18 H -0.183 1.183 19 H -0.184 1.184 20 H -0.178 1.178 21 H 0.113 0.887 22 H 0.111 0.889 23 H 0.122 0.878 24 H 0.147 0.853 25 H 0.143 0.857 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.507 -1.021 -1.368 5.765 hybrid contribution 0.557 -1.041 0.058 1.182 sum -4.950 -2.062 -1.310 5.520 Atomic orbital electron populations 1.20355 0.80856 1.05398 1.04802 1.24304 0.97092 0.80309 1.03259 1.69574 1.01751 1.29834 1.21580 1.20175 0.92091 0.89836 1.15107 1.18740 0.85237 0.95409 1.06999 1.42672 1.03603 1.10017 1.64009 0.73194 1.15987 0.91208 0.75417 1.29761 1.91236 1.97407 1.29976 1.96542 1.20547 0.95175 0.94614 0.99144 1.20695 0.97416 0.91862 1.14677 1.18294 0.87891 0.93433 0.88203 1.19885 1.01987 0.91607 1.32644 0.90171 1.27027 0.93405 1.06418 0.91731 1.69859 1.10164 1.41190 1.19799 0.84977 0.79801 0.74403 0.79537 1.18290 1.18408 1.17795 0.88721 0.88908 0.87828 0.85324 0.85653 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.31 10.51 71.24 0.75 -0.57 15 2 C 0.21 8.30 8.09 137.89 1.12 9.41 15 3 N -0.51 -25.17 11.22 -175.51 -1.97 -27.14 15 4 C -0.05 -2.83 7.19 41.39 0.30 -2.53 15 5 C 0.05 2.37 7.27 38.83 0.28 2.65 15 6 N -0.59 -23.06 6.24 -179.08 -1.12 -24.17 15 7 H 0.43 13.00 8.96 -92.70 -0.83 12.17 15 8 C -0.10 -4.94 7.31 22.59 0.17 -4.77 15 9 F -0.17 -7.83 17.25 44.97 0.78 -7.05 15 10 C -0.07 -3.67 9.92 22.23 0.22 -3.45 15 11 C -0.22 -11.95 8.70 22.74 0.20 -11.76 15 12 C 0.13 7.13 5.74 -19.92 -0.11 7.02 15 13 C -0.43 -23.67 9.08 23.28 0.21 -23.46 15 14 H 0.08 4.40 7.91 -2.91 -0.02 4.37 15 15 C 0.03 1.65 5.13 85.27 0.44 2.08 15 16 N -0.79 -38.85 10.97 21.84 0.24 -38.61 15 17 Si 0.99 36.19 29.60 68.60 2.03 38.22 15 18 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 19 H -0.26 -8.94 7.11 99.48 0.71 -8.24 15 20 H -0.25 -8.62 7.11 99.48 0.71 -7.91 15 21 H 0.09 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 23 H 0.10 1.70 8.14 -2.39 -0.02 1.69 15 24 H 0.13 5.50 8.06 -2.91 -0.02 5.48 15 25 H 0.13 6.63 6.15 -2.91 -0.02 6.62 15 26 H 0.30 12.96 8.30 -92.71 -0.77 12.19 15 Total: -1.00 -66.53 239.36 3.92 -62.61 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.40 Total: 21.52 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.56 Total: -25.36 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.85 Total: -89.93 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.78 Total: -7.05 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -66.53 3.92 -62.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306887852.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.484 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds