Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35818 * 126.44170 * 2 1 4 4 N 1.30481 * 109.92006 * 179.81451 * 3 2 1 5 5 C 1.34326 * 109.76686 * 0.45536 * 4 3 2 6 6 C 1.38171 * 126.44273 * 180.30303 * 2 1 3 7 7 C 1.39095 * 134.08917 * 0.02562 * 6 2 1 8 8 F 1.35101 * 119.55710 * 359.97054 * 7 6 2 9 9 C 1.38712 * 120.89157 * 179.97438 * 7 6 2 10 10 C 1.37593 * 121.37068 * 359.97438 * 9 7 6 11 11 C 1.40792 * 120.17343 * 0.02562 * 10 9 7 12 12 C 1.40637 * 120.64929 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99628 * 204.23591 * 12 11 10 14 14 C 1.40002 * 119.99971 * 24.23183 * 12 11 10 15 15 N 1.30845 * 120.00413 * 17.79896 * 14 12 11 16 16 Si 1.86807 * 119.99858 * 197.79415 * 14 12 11 17 17 H 1.48498 * 109.46926 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47162 * 120.00003 * 16 14 12 19 19 H 1.48501 * 109.47059 * 240.00260 * 16 14 12 20 20 H 1.09006 * 109.47191 * 269.69408 * 1 2 3 21 21 H 1.08994 * 109.47436 * 149.69130 * 1 2 3 22 22 H 1.08998 * 109.46938 * 29.69419 * 1 2 3 23 23 H 1.08001 * 125.04136 * 359.97438 * 3 2 1 24 24 H 1.08004 * 119.31477 * 179.97438 * 9 7 6 25 25 H 1.07995 * 119.91266 * 180.02562 * 10 9 7 26 26 H 0.97000 * 120.00238 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2717 1.0926 0.0000 4 7 3.5227 0.7216 0.0040 5 6 3.5987 -0.6195 -0.0033 6 6 2.2857 -1.1115 -0.0059 7 6 2.0569 -2.4835 -0.0136 8 9 0.7881 -2.9475 -0.0160 9 6 3.1139 -3.3817 -0.0187 10 6 4.4205 -2.9504 -0.0169 11 6 4.7109 -1.5728 -0.0092 12 6 6.0426 -1.1208 -0.0068 13 1 6.2799 -0.1418 0.3827 14 6 7.0608 -1.9401 -0.5091 15 7 6.7642 -2.9513 -1.2846 16 14 8.8429 -1.5892 -0.0723 17 1 8.9104 -0.3989 0.8130 18 1 9.4201 -2.7624 0.6317 19 1 9.6146 -1.3278 -1.3138 20 1 -0.3634 -0.0055 1.0277 21 1 -0.3634 -0.8871 -0.5186 22 1 -0.3633 0.8927 -0.5091 23 1 1.9287 2.1167 -0.0004 24 1 2.9070 -4.4418 -0.0243 25 1 5.2253 -3.6705 -0.0215 26 1 7.4697 -3.5187 -1.6329 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306889854.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = 1.266044 kcal Electronic energy + Delta-G solvation = -14339.906888 eV Core-core repulsion = 11718.752280 eV Total energy + Delta-G solvation = -2621.154609 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.25098 -42.48068 -37.85484 -35.30925 -34.65819 -31.20558 -30.07588 -27.55951 -26.79870 -23.61663 -22.84864 -21.37093 -19.27634 -18.15648 -17.82676 -16.89843 -16.72222 -16.62239 -15.68154 -15.61378 -15.11820 -14.46305 -14.04915 -13.91344 -13.78114 -13.38552 -12.91305 -12.84342 -12.47981 -12.05618 -11.80508 -11.77213 -11.15688 -10.72381 -10.67635 -9.11482 -8.90360 -8.72461 -6.31221 0.39945 0.99992 1.39939 1.49174 1.57311 1.99800 2.16906 2.18664 2.55892 3.55204 3.78083 3.95238 4.02530 4.07089 4.44413 4.48130 4.66130 4.77899 4.93511 5.05547 5.14408 5.53263 5.79070 5.83031 5.91500 6.17687 6.48215 6.61623 6.70337 6.77587 7.37636 8.12877 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.040763 B = 0.009559 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.730491 B = 2928.475231 C = 3534.590473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.497 5.497 3 C 0.199 3.801 4 N -0.513 5.513 5 C -0.054 4.054 6 C 0.045 3.955 7 C -0.097 4.097 8 F -0.170 7.170 9 C -0.076 4.076 10 C -0.226 4.226 11 C 0.127 3.873 12 C -0.437 4.437 13 H 0.080 0.920 14 C 0.034 3.966 15 N -0.790 5.790 16 Si 0.994 3.006 17 H -0.260 1.260 18 H -0.255 1.255 19 H -0.260 1.260 20 H 0.079 0.921 21 H 0.069 0.931 22 H 0.121 0.879 23 H 0.253 0.747 24 H 0.127 0.873 25 H 0.125 0.875 26 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.039 3.315 1.415 6.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.189 5.189 3 C -0.083 4.083 4 N -0.231 5.231 5 C -0.174 4.174 6 C -0.066 4.066 7 C -0.121 4.121 8 F -0.150 7.150 9 C -0.096 4.096 10 C -0.248 4.248 11 C 0.122 3.878 12 C -0.463 4.463 13 H 0.098 0.902 14 C -0.186 4.186 15 N -0.413 5.413 16 Si 0.813 3.187 17 H -0.183 1.183 18 H -0.179 1.179 19 H -0.184 1.184 20 H 0.098 0.902 21 H 0.088 0.912 22 H 0.139 0.861 23 H 0.269 0.731 24 H 0.145 0.855 25 H 0.142 0.858 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.442 3.655 1.263 5.889 hybrid contribution -0.407 -0.677 -0.034 0.791 sum -4.849 2.977 1.228 5.822 Atomic orbital electron populations 1.22146 0.74407 1.05353 1.04042 1.45276 1.08087 1.04474 1.61028 1.25827 0.84330 0.94346 1.03800 1.69595 1.20562 1.11902 1.21076 1.20175 0.91849 0.90130 1.15243 1.18801 0.92192 0.88534 1.07072 1.15974 0.78700 0.87973 1.29443 1.91222 1.37840 1.89413 1.96522 1.20548 0.91771 0.98042 0.99287 1.20682 0.94675 0.94604 1.14854 1.18302 0.91052 0.90325 0.88087 1.19870 0.91673 1.02403 1.32377 0.90232 1.27016 1.06736 0.93096 0.91718 1.69859 1.38450 1.13133 1.19855 0.84978 0.74224 0.79974 0.79527 1.18308 1.17861 1.18443 0.90197 0.91212 0.86052 0.73109 0.85486 0.85777 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.12 10.98 127.77 1.40 3.52 15 2 N -0.50 -19.23 3.21 -543.48 -1.74 -20.97 15 3 C 0.20 7.45 12.51 180.02 2.25 9.71 15 4 N -0.51 -25.21 11.22 -187.52 -2.10 -27.31 15 5 C -0.05 -2.92 7.19 41.39 0.30 -2.62 15 6 C 0.05 2.23 6.88 38.83 0.27 2.50 15 7 C -0.10 -4.80 7.31 22.59 0.17 -4.64 15 8 F -0.17 -7.66 16.04 44.97 0.72 -6.94 15 9 C -0.08 -3.77 9.92 22.23 0.22 -3.55 15 10 C -0.23 -12.12 8.70 22.74 0.20 -11.92 15 11 C 0.13 7.19 5.73 -19.92 -0.11 7.07 15 12 C -0.44 -23.90 9.08 23.28 0.21 -23.69 15 13 H 0.08 4.39 7.91 -2.91 -0.02 4.36 15 14 C 0.03 1.65 5.15 85.27 0.44 2.09 15 15 N -0.79 -39.32 10.95 21.84 0.24 -39.08 15 16 Si 0.99 36.53 29.60 68.60 2.03 38.56 15 17 H -0.26 -9.61 7.11 99.48 0.71 -8.90 15 18 H -0.25 -8.73 7.11 99.48 0.71 -8.03 15 19 H -0.26 -9.05 7.11 99.48 0.71 -8.34 15 20 H 0.08 1.83 8.14 -2.38 -0.02 1.81 15 21 H 0.07 1.98 7.17 -2.39 -0.02 1.96 15 22 H 0.12 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.25 5.98 8.06 -2.91 -0.02 5.96 15 24 H 0.13 5.47 8.06 -2.91 -0.02 5.45 15 25 H 0.12 6.63 6.15 -2.91 -0.02 6.61 15 26 H 0.30 13.06 8.30 -92.71 -0.77 12.29 15 Total: -1.00 -67.75 237.71 5.69 -62.05 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.21 Total: 15.22 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 5.34 Total: -21.53 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -3.61 Total: -87.37 kcal Atomic # 9 Polarization: -7.66 SS G_CDS: 0.72 Total: -6.94 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Total: -67.75 5.69 -62.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306889854.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.320 kcal (2) G-P(sol) polarization free energy of solvation -67.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds