Wall clock time and date at job start Mon Mar 30 2020 03:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38392 * 119.84625 * 2 1 4 4 C 1.37920 * 120.14695 * 180.28214 * 3 2 1 5 5 C 1.39655 * 119.84893 * 359.47077 * 4 3 2 6 6 C 1.47730 * 120.14864 * 180.28064 * 5 4 3 7 7 O 1.21476 * 119.99515 * 175.46055 * 6 5 4 8 8 O 1.34708 * 120.00123 * 355.45880 * 6 5 4 9 9 C 1.39609 * 119.69969 * 0.25146 * 5 4 3 10 10 C 1.50698 * 120.07583 * 180.02562 * 9 5 4 11 11 C 1.50703 * 109.47218 * 78.69802 * 10 9 5 12 12 H 1.07997 * 119.99729 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99847 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00288 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99828 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47100 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47239 * 119.99785 * 15 13 11 18 18 H 1.48502 * 109.47187 * 240.00135 * 15 13 11 19 19 C 1.37969 * 119.84528 * 0.02562 * 9 5 4 20 20 H 1.09002 * 109.47259 * 270.27506 * 1 2 3 21 21 H 1.09001 * 109.47522 * 30.27524 * 1 2 3 22 22 H 1.09003 * 109.47623 * 150.27130 * 1 2 3 23 23 H 1.07995 * 119.93019 * 0.02562 * 3 2 1 24 24 H 1.08003 * 120.07667 * 179.74928 * 4 3 2 25 25 H 0.96699 * 117.00065 * 180.02562 * 8 6 5 26 26 H 1.09000 * 109.46983 * 198.70164 * 10 9 5 27 27 H 1.09003 * 109.47076 * 318.69877 * 10 9 5 28 28 H 0.96996 * 120.00133 * 180.02562 * 14 13 11 29 29 H 1.08000 * 119.91817 * 179.97438 * 19 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2004 0.0000 4 6 3.5749 1.2076 -0.0059 5 6 4.2763 0.0000 -0.0006 6 6 5.7536 0.0001 -0.0006 7 8 6.3610 -1.0483 0.0872 8 8 6.4271 1.1626 -0.0980 9 6 3.5751 -1.2072 0.0052 10 6 4.3235 -2.5152 0.0114 11 6 4.8147 -2.8063 1.4061 12 1 4.6055 -2.1136 2.2078 13 6 5.5312 -3.9569 1.6585 14 7 5.7855 -4.8007 0.6823 15 14 6.1395 -4.3180 3.3874 16 1 5.7243 -3.2205 4.2975 17 1 5.5573 -5.6000 3.8593 18 1 7.6209 -4.4202 3.3796 19 6 2.1955 -1.1999 0.0052 20 1 -0.3634 0.0049 1.0277 21 1 -0.3634 0.8875 -0.5181 22 1 -0.3634 -0.8924 -0.5096 23 1 1.6521 2.1335 0.0004 24 1 4.1112 2.1450 -0.0100 25 1 7.3928 1.1122 -0.0942 26 1 3.6590 -3.3155 -0.3142 27 1 5.1740 -2.4504 -0.6672 28 1 6.2893 -5.6103 0.8600 29 1 1.6519 -2.1331 0.0093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307110596.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:19 Heat of formation + Delta-G solvation = -74.659069 kcal Electronic energy + Delta-G solvation = -14564.163863 eV Core-core repulsion = 12030.884448 eV Total energy + Delta-G solvation = -2533.279415 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.80379 -38.21354 -35.42692 -33.45657 -32.30938 -31.11367 -27.33370 -27.16816 -23.45783 -22.45780 -21.34826 -19.49086 -17.35474 -16.51801 -16.20201 -14.96279 -14.71040 -14.66815 -14.15866 -13.84568 -13.47235 -12.64337 -12.45001 -12.21061 -12.11328 -11.55439 -11.25305 -11.18561 -10.86143 -10.78745 -10.61558 -10.44701 -9.63965 -9.37048 -9.08884 -8.31551 -8.22584 -7.96981 -5.89614 -3.87910 1.34318 1.97448 3.30578 3.37329 3.43707 3.48248 3.71544 4.35229 4.58527 5.14154 5.22297 5.43462 5.48607 5.53714 5.74927 5.86603 5.94058 6.04007 6.20471 6.43170 6.56328 6.81467 6.98581 7.02810 7.13602 7.44232 7.66326 7.89537 8.03767 8.43428 8.73328 9.10845 9.71059 11.22307 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.010323 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.701198 B = 2711.675034 C = 3381.226320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.059 4.059 3 C -0.165 4.165 4 C -0.065 4.065 5 C -0.135 4.135 6 C 0.496 3.504 7 O -0.448 6.448 8 O -0.533 6.533 9 C 0.028 3.972 10 C 0.041 3.959 11 C -0.481 4.481 12 H 0.050 0.950 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.140 4.140 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.118 0.882 24 H 0.127 0.873 25 H 0.403 0.597 26 H 0.023 0.977 27 H 0.057 0.943 28 H 0.258 0.742 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 11.369 -2.113 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.083 4.083 5 C -0.136 4.136 6 C 0.338 3.662 7 O -0.332 6.332 8 O -0.346 6.346 9 C 0.027 3.973 10 C 0.005 3.995 11 C -0.520 4.520 12 H 0.068 0.932 13 C -0.139 4.139 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.158 4.158 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.136 0.864 24 H 0.145 0.855 25 H 0.260 0.740 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.314 10.900 -2.120 12.773 hybrid contribution 1.097 -0.230 1.020 1.515 sum -5.217 10.669 -1.100 11.927 Atomic orbital electron populations 1.20814 0.91575 1.02475 1.02216 1.20109 0.95796 0.93382 0.96621 1.20744 0.93825 0.97193 1.06557 1.21303 0.94113 0.97116 0.95757 1.18897 0.89052 0.94257 1.11437 1.21022 0.89114 0.80989 0.75055 1.91122 1.69466 1.31168 1.41413 1.84533 1.25812 1.37122 1.87116 1.20902 0.93388 0.96528 0.86449 1.18665 0.95392 0.86392 0.99080 1.20749 1.33710 1.05023 0.92498 0.93206 1.24867 0.95959 0.96341 0.96741 1.69956 1.40643 1.11616 1.31223 0.86549 0.78612 0.77948 0.84944 1.19955 1.21122 1.21094 1.20957 0.93522 0.97415 1.03907 0.91168 0.91822 0.91471 0.86364 0.85529 0.74032 0.95837 0.92496 0.93219 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.00 36.00 0.36 -0.97 15 2 C -0.06 -0.92 5.89 -104.53 -0.62 -1.54 15 3 C -0.17 -2.48 9.68 -39.64 -0.38 -2.86 15 4 C -0.06 -1.08 9.62 -39.17 -0.38 -1.46 15 5 C -0.14 -2.78 5.86 -104.98 -0.62 -3.39 15 6 C 0.50 10.40 8.19 34.61 0.28 10.69 15 7 O -0.45 -11.34 13.00 -19.25 -0.25 -11.59 15 8 O -0.53 -8.53 12.69 -40.51 -0.51 -9.05 15 9 C 0.03 0.62 5.11 -104.21 -0.53 0.09 15 10 C 0.04 1.10 4.40 -29.03 -0.13 0.97 15 11 C -0.48 -14.04 7.50 -34.44 -0.26 -14.29 15 12 H 0.05 1.46 7.74 -52.49 -0.41 1.06 15 13 C 0.06 1.82 5.46 -17.82 -0.10 1.72 15 14 N -0.89 -27.57 13.29 55.43 0.74 -26.83 15 15 Si 0.89 22.66 29.54 -169.99 -5.02 17.64 15 16 H -0.27 -6.88 7.11 56.52 0.40 -6.48 15 17 H -0.28 -7.06 7.11 56.52 0.40 -6.66 15 18 H -0.28 -7.22 7.11 56.52 0.40 -6.81 15 19 C -0.14 -2.65 9.30 -39.64 -0.37 -3.02 15 20 H 0.07 0.76 8.14 -51.93 -0.42 0.33 15 21 H 0.06 0.62 8.08 -51.93 -0.42 0.20 15 22 H 0.07 0.73 8.08 -51.93 -0.42 0.31 15 23 H 0.12 1.40 8.06 -52.49 -0.42 0.97 15 24 H 0.13 1.83 7.62 -52.48 -0.40 1.43 15 25 H 0.40 4.64 9.11 45.56 0.42 5.06 15 26 H 0.02 0.65 7.99 -51.93 -0.41 0.23 15 27 H 0.06 1.67 6.16 -51.93 -0.32 1.35 15 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 29 H 0.13 2.27 8.03 -52.49 -0.42 1.85 15 LS Contribution 258.18 15.07 3.89 3.89 Total: -1.00 -33.74 258.18 -6.26 -40.00 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -2.37 Total: 0.01 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.73 Total: -14.06 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.74 Total: -26.83 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.76 Total: -20.63 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.74 -6.26 -40.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307110596.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.662 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds