Wall clock time and date at job start Mon Mar 30 2020 03:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38392 * 119.84625 * 2 1 4 4 C 1.37920 * 120.14695 * 180.28214 * 3 2 1 5 5 C 1.39655 * 119.84893 * 359.47077 * 4 3 2 6 6 C 1.47730 * 120.14864 * 180.28064 * 5 4 3 7 7 O 1.21476 * 119.99515 * 175.46055 * 6 5 4 8 8 O 1.34708 * 120.00123 * 355.45880 * 6 5 4 9 9 C 1.39609 * 119.69969 * 0.25146 * 5 4 3 10 10 C 1.50698 * 120.07583 * 180.02562 * 9 5 4 11 11 C 1.50703 * 109.47218 * 78.69802 * 10 9 5 12 12 H 1.07997 * 119.99729 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99847 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00288 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99828 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47100 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47239 * 119.99785 * 15 13 11 18 18 H 1.48502 * 109.47187 * 240.00135 * 15 13 11 19 19 C 1.37969 * 119.84528 * 0.02562 * 9 5 4 20 20 H 1.09002 * 109.47259 * 270.27506 * 1 2 3 21 21 H 1.09001 * 109.47522 * 30.27524 * 1 2 3 22 22 H 1.09003 * 109.47623 * 150.27130 * 1 2 3 23 23 H 1.07995 * 119.93019 * 0.02562 * 3 2 1 24 24 H 1.08003 * 120.07667 * 179.74928 * 4 3 2 25 25 H 0.96699 * 117.00065 * 180.02562 * 8 6 5 26 26 H 1.09000 * 109.46983 * 198.70164 * 10 9 5 27 27 H 1.09003 * 109.47076 * 318.69877 * 10 9 5 28 28 H 0.96996 * 120.00133 * 180.02562 * 14 13 11 29 29 H 1.08000 * 119.91817 * 179.97438 * 19 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2004 0.0000 4 6 3.5749 1.2076 -0.0059 5 6 4.2763 0.0000 -0.0006 6 6 5.7536 0.0001 -0.0006 7 8 6.3610 -1.0483 0.0872 8 8 6.4271 1.1626 -0.0980 9 6 3.5751 -1.2072 0.0052 10 6 4.3235 -2.5152 0.0114 11 6 4.8147 -2.8063 1.4061 12 1 4.6055 -2.1136 2.2078 13 6 5.5312 -3.9569 1.6585 14 7 5.7855 -4.8007 0.6823 15 14 6.1395 -4.3180 3.3874 16 1 5.7243 -3.2205 4.2975 17 1 5.5573 -5.6000 3.8593 18 1 7.6209 -4.4202 3.3796 19 6 2.1955 -1.1999 0.0052 20 1 -0.3634 0.0049 1.0277 21 1 -0.3634 0.8875 -0.5181 22 1 -0.3634 -0.8924 -0.5096 23 1 1.6521 2.1335 0.0004 24 1 4.1112 2.1450 -0.0100 25 1 7.3928 1.1122 -0.0942 26 1 3.6590 -3.3155 -0.3142 27 1 5.1740 -2.4504 -0.6672 28 1 6.2893 -5.6103 0.8600 29 1 1.6519 -2.1331 0.0093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307110596.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:18 Heat of formation + Delta-G solvation = -97.384952 kcal Electronic energy + Delta-G solvation = -14565.149331 eV Core-core repulsion = 12030.884448 eV Total energy + Delta-G solvation = -2534.264883 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.34637 -39.65560 -36.98203 -35.39382 -33.83844 -32.77809 -29.13072 -28.50184 -25.41883 -23.87068 -22.89523 -20.99732 -18.84947 -18.53548 -17.93907 -16.62374 -16.47039 -16.19281 -15.64957 -15.24276 -14.64811 -14.34545 -14.11096 -13.92510 -13.46072 -13.06150 -12.91069 -12.68082 -12.61615 -12.45525 -12.27789 -12.20748 -11.50759 -11.46524 -10.90844 -10.46349 -9.68679 -9.49665 -8.14294 -6.20376 -0.09422 0.56353 1.33890 1.36009 1.47615 1.78373 2.28797 2.41035 2.94380 3.19803 3.95250 4.02644 4.12106 4.33087 4.49804 4.65584 4.87582 4.92384 4.93599 5.15730 5.25286 5.33765 5.37701 5.44038 5.67482 5.71959 5.87055 5.94082 6.07603 6.24435 6.85585 7.25388 7.42388 8.98070 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.010323 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.701198 B = 2711.675034 C = 3381.226320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.046 4.046 3 C -0.149 4.149 4 C -0.055 4.055 5 C -0.163 4.163 6 C 0.501 3.499 7 O -0.508 6.508 8 O -0.511 6.511 9 C -0.010 4.010 10 C 0.053 3.947 11 C -0.488 4.488 12 H 0.041 0.959 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.958 3.042 16 H -0.268 1.268 17 H -0.271 1.271 18 H -0.282 1.282 19 C -0.156 4.156 20 H 0.084 0.916 21 H 0.094 0.906 22 H 0.070 0.930 23 H 0.168 0.832 24 H 0.156 0.844 25 H 0.423 0.577 26 H -0.003 1.003 27 H 0.021 0.979 28 H 0.260 0.740 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 14.208 -1.201 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.046 4.046 3 C -0.167 4.167 4 C -0.073 4.073 5 C -0.164 4.164 6 C 0.346 3.654 7 O -0.396 6.396 8 O -0.325 6.325 9 C -0.010 4.010 10 C 0.017 3.983 11 C -0.526 4.526 12 H 0.059 0.941 13 C -0.193 4.193 14 N -0.575 5.575 15 Si 0.783 3.217 16 H -0.192 1.192 17 H -0.197 1.197 18 H -0.208 1.208 19 C -0.174 4.174 20 H 0.103 0.897 21 H 0.112 0.888 22 H 0.089 0.911 23 H 0.185 0.815 24 H 0.173 0.827 25 H 0.284 0.716 26 H 0.015 0.985 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.093 13.781 -1.210 16.028 hybrid contribution 1.576 -0.947 0.668 1.956 sum -6.518 12.834 -0.542 14.404 Atomic orbital electron populations 1.20923 0.88116 1.04262 1.03622 1.20568 0.98172 0.92145 0.93697 1.21321 0.93206 0.98751 1.03394 1.21629 0.95127 0.96410 0.94098 1.19043 0.88971 0.95164 1.13268 1.21287 0.89721 0.81068 0.73369 1.91104 1.70622 1.33362 1.44526 1.84462 1.27608 1.34425 1.86051 1.20593 0.94797 0.95095 0.90508 1.18278 0.94056 0.88664 0.97317 1.20978 1.33393 1.04771 0.93453 0.94067 1.25773 0.96252 0.96266 1.01053 1.70088 1.41674 1.12203 1.33503 0.85505 0.77953 0.78303 0.79908 1.19190 1.19666 1.20834 1.21027 0.92296 0.99202 1.04884 0.89709 0.88772 0.91078 0.81502 0.82655 0.71644 0.98490 0.96107 0.93072 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 10.00 71.23 0.71 -1.39 15 2 C -0.05 -1.28 5.89 -19.80 -0.12 -1.40 15 3 C -0.15 -3.74 9.68 22.23 0.22 -3.53 15 4 C -0.05 -1.65 9.62 22.54 0.22 -1.43 15 5 C -0.16 -6.68 5.86 -20.10 -0.12 -6.80 15 6 C 0.50 21.37 8.19 70.33 0.58 21.95 15 7 O -0.51 -27.10 13.00 19.92 0.26 -26.84 15 8 O -0.51 -15.68 12.69 -56.18 -0.71 -16.39 15 9 C -0.01 -0.44 5.11 -19.60 -0.10 -0.54 15 10 C 0.05 3.07 4.40 29.10 0.13 3.20 15 11 C -0.49 -29.80 7.50 25.60 0.19 -29.61 15 12 H 0.04 2.51 7.74 -2.91 -0.02 2.49 15 13 C 0.00 0.20 5.46 84.65 0.46 0.66 15 14 N -0.93 -60.18 13.29 21.45 0.28 -59.90 15 15 Si 0.96 47.67 29.54 68.60 2.03 49.70 15 16 H -0.27 -12.85 7.11 99.48 0.71 -12.14 15 17 H -0.27 -12.80 7.11 99.48 0.71 -12.09 15 18 H -0.28 -13.84 7.11 99.48 0.71 -13.13 15 19 C -0.16 -5.90 9.30 22.23 0.21 -5.70 15 20 H 0.08 1.42 8.14 -2.39 -0.02 1.40 15 21 H 0.09 1.24 8.08 -2.39 -0.02 1.22 15 22 H 0.07 1.30 8.08 -2.39 -0.02 1.28 15 23 H 0.17 2.67 8.06 -2.91 -0.02 2.65 15 24 H 0.16 3.75 7.62 -2.91 -0.02 3.73 15 25 H 0.42 9.22 9.11 -74.06 -0.67 8.55 15 26 H 0.00 -0.19 7.99 -2.39 -0.02 -0.21 15 27 H 0.02 1.33 6.16 -2.39 -0.01 1.32 15 28 H 0.26 15.74 8.31 -92.71 -0.77 14.97 15 29 H 0.12 4.55 8.03 -2.91 -0.02 4.53 15 Total: -1.00 -78.17 258.18 4.72 -73.45 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 0.49 Total: 4.57 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 2.38 Total: -24.58 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.28 Total: -59.90 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -0.45 Total: -43.23 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -78.17 4.72 -73.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307110596.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.937 kcal (2) G-P(sol) polarization free energy of solvation -78.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds