Wall clock time and date at job start Mon Mar 30 2020 02:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99441 * 2 1 4 4 H 1.48501 * 109.47262 * 269.99656 * 3 2 1 5 5 H 1.48497 * 109.47541 * 29.99915 * 3 2 1 6 6 H 1.48502 * 109.47103 * 150.00310 * 3 2 1 7 7 C 1.37877 * 120.00651 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99608 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.48342 * 59.99657 * 9 7 2 11 11 O 1.42903 * 109.48705 * 299.96642 * 9 7 2 12 12 C 1.42909 * 114.09460 * 178.85781 * 11 9 7 13 13 H 1.08998 * 109.47982 * 301.16909 * 12 11 9 14 14 O 1.42903 * 109.48566 * 181.14560 * 12 11 9 15 15 C 1.53088 * 109.41475 * 61.15836 * 12 11 9 16 16 H 1.09004 * 109.51664 * 182.48761 * 15 12 11 17 17 O 1.42899 * 109.57479 * 62.33211 * 15 12 11 18 18 C 1.53179 * 109.16372 * 302.38828 * 15 12 11 19 19 H 1.09000 * 109.54070 * 297.11796 * 18 15 12 20 20 O 1.42898 * 109.53988 * 176.85077 * 18 15 12 21 21 C 1.53098 * 109.47723 * 180.02562 * 9 7 2 22 22 H 1.08995 * 109.52391 * 57.69964 * 21 9 7 23 23 O 1.42894 * 109.51975 * 297.50175 * 21 9 7 24 24 H 0.96998 * 120.00509 * 359.97438 * 1 2 3 25 25 H 0.96706 * 113.99825 * 60.05499 * 14 12 11 26 26 H 0.96687 * 114.00385 * 60.28114 * 17 15 12 27 27 H 0.96700 * 114.00464 * 60.44958 * 20 18 15 28 28 H 0.96705 * 113.99857 * 60.00457 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1938 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6247 -2.5572 -0.8896 11 8 0.4296 -2.5753 1.1673 12 6 -0.3517 -3.7687 1.2538 13 1 -0.9991 -3.8435 0.3802 14 8 -1.1512 -3.7303 2.4376 15 6 0.5787 -4.9834 1.3053 16 1 -0.0158 -5.8968 1.3268 17 8 1.3912 -4.9147 2.4789 18 6 1.4737 -4.9843 0.0622 19 1 0.8573 -5.0877 -0.8308 20 8 2.3955 -6.0736 0.1378 21 6 2.2460 -3.6628 0.0018 22 1 2.8993 -3.5826 0.8706 23 8 3.0299 -3.6222 -1.1922 24 1 -0.4851 0.8400 0.0004 25 1 -1.7660 -2.9846 2.4730 26 1 0.8891 -4.9104 3.3051 27 1 1.9744 -6.9431 0.1790 28 1 3.5427 -2.8092 -1.2986 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307307674.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:58 Heat of formation + Delta-G solvation = -275.039305 kcal Electronic energy + Delta-G solvation = -16360.687381 eV Core-core repulsion = 13375.576812 eV Total energy + Delta-G solvation = -2985.110568 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.087 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.04660 -38.13683 -37.70289 -36.33675 -36.23123 -34.55502 -31.54854 -30.25887 -27.36489 -24.56770 -23.59372 -21.32384 -19.26023 -19.01906 -18.49893 -18.21060 -17.68202 -17.00161 -16.72239 -16.52258 -15.16824 -15.03469 -14.73501 -14.55169 -14.38406 -13.70662 -13.47142 -13.08629 -12.87294 -12.64898 -12.28240 -12.11914 -11.90369 -11.73660 -11.18863 -10.88688 -10.76675 -10.65891 -9.85203 -8.25666 -6.46835 1.42057 1.43617 1.54209 2.35473 2.59611 2.94531 3.04498 3.21808 3.34244 3.69577 3.79075 4.06659 4.17405 4.23388 4.38651 4.41898 4.69603 4.78475 5.20971 5.60828 5.94769 6.45494 6.52993 6.73988 6.80962 6.82468 6.99385 7.29159 8.82899 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.032694 B = 0.011788 C = 0.009465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.226705 B = 2374.703341 C = 2957.577968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.031 3.969 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.211 3.789 10 H -0.001 1.001 11 O -0.400 6.400 12 C 0.222 3.778 13 H 0.047 0.953 14 O -0.554 6.554 15 C 0.070 3.930 16 H 0.102 0.898 17 O -0.557 6.557 18 C 0.120 3.880 19 H 0.084 0.916 20 O -0.557 6.557 21 C 0.098 3.902 22 H 0.039 0.961 23 O -0.567 6.567 24 H 0.266 0.734 25 H 0.399 0.601 26 H 0.390 0.610 27 H 0.392 0.608 28 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.731 -7.628 1.243 7.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.173 4.173 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.592 4.592 8 H 0.089 0.911 9 C 0.155 3.845 10 H 0.017 0.983 11 O -0.322 6.322 12 C 0.124 3.876 13 H 0.065 0.935 14 O -0.364 6.364 15 C 0.010 3.990 16 H 0.120 0.880 17 O -0.364 6.364 18 C 0.061 3.939 19 H 0.101 0.899 20 O -0.364 6.364 21 C 0.038 3.962 22 H 0.057 0.943 23 O -0.375 6.375 24 H 0.075 0.925 25 H 0.250 0.750 26 H 0.239 0.761 27 H 0.242 0.758 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.923 -8.026 0.970 8.137 hybrid contribution -0.846 1.374 0.291 1.639 sum -1.769 -6.652 1.261 6.998 Atomic orbital electron populations 1.70108 1.07620 1.27947 1.47069 1.25897 0.95744 1.03055 0.92565 0.85419 0.78564 0.78096 0.78710 1.19113 1.20765 1.19181 1.21252 0.93213 0.90579 1.54174 0.91085 1.20132 0.87381 0.93412 0.83601 0.98328 1.88204 1.58691 1.38895 1.46405 1.23403 0.88793 0.87914 0.87534 0.93528 1.86289 1.54758 1.52580 1.42744 1.23106 0.91240 0.97355 0.87300 0.88034 1.86500 1.36683 1.97091 1.16160 1.21821 0.90251 0.87025 0.94810 0.89858 1.86610 1.35670 1.17244 1.96920 1.22302 0.93227 0.93624 0.87049 0.94271 1.86268 1.63570 1.45141 1.42566 0.92505 0.74968 0.76106 0.75817 0.76158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.60 12.84 21.45 0.28 -50.33 15 2 C 0.03 1.70 5.40 84.66 0.46 2.16 15 3 Si 0.97 42.25 29.54 68.60 2.03 44.28 15 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 15 7 C -0.56 -30.33 8.21 25.60 0.21 -30.12 15 8 H 0.07 3.70 7.09 -2.91 -0.02 3.68 15 9 C 0.21 10.83 2.23 29.88 0.07 10.90 15 10 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 15 11 O -0.40 -20.34 9.62 -122.40 -1.18 -21.51 15 12 C 0.22 8.67 3.83 72.01 0.28 8.94 15 13 H 0.05 1.77 8.14 -2.39 -0.02 1.75 15 14 O -0.55 -18.82 12.98 -121.51 -1.58 -20.40 15 15 C 0.07 2.40 3.24 30.68 0.10 2.50 15 16 H 0.10 2.65 8.14 -2.39 -0.02 2.63 15 17 O -0.56 -20.54 12.58 -123.28 -1.55 -22.09 15 18 C 0.12 4.50 3.01 30.71 0.09 4.60 15 19 H 0.08 2.88 8.14 -2.39 -0.02 2.86 15 20 O -0.56 -19.18 13.11 -129.92 -1.70 -20.89 15 21 C 0.10 4.47 2.61 30.69 0.08 4.55 15 22 H 0.04 1.99 7.83 -2.39 -0.02 1.97 15 23 O -0.57 -24.96 13.25 -142.99 -1.90 -26.85 15 24 H 0.27 14.18 8.31 -92.71 -0.77 13.41 15 25 H 0.40 11.72 9.12 -74.05 -0.68 11.05 15 26 H 0.39 11.81 8.55 -74.07 -0.63 11.18 15 27 H 0.39 8.70 9.09 -74.06 -0.67 8.02 15 28 H 0.39 15.40 7.81 -74.05 -0.58 14.82 15 Total: -1.00 -69.81 244.13 -5.65 -75.46 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -1.33 Total: 38.81 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 1.28 Total: 3.53 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.28 Total: -50.33 kcal Atomic # 8 Polarization: -103.84 SS G_CDS: -7.90 Total: -111.74 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -69.81 -5.65 -75.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307307674.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.578 kcal (2) G-P(sol) polarization free energy of solvation -69.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds