Wall clock time and date at job start Mon Mar 30 2020 03:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37937 * 120.02233 * 2 1 4 4 C 1.38321 * 120.21389 * 180.02562 * 3 2 1 5 5 C 1.38968 * 120.25381 * 0.25889 * 4 3 2 6 6 O 1.35904 * 119.98255 * 179.74469 * 5 4 3 7 7 C 1.38373 * 120.04423 * 359.48504 * 5 4 3 8 8 C 1.50696 * 120.10999 * 180.27730 * 7 5 4 9 9 C 1.39673 * 119.78212 * 0.50825 * 7 5 4 10 10 C 1.47834 * 120.12193 * 179.76905 * 9 7 5 11 11 O 1.21762 * 120.00059 * 87.32463 * 10 9 7 12 12 C 1.41793 * 119.99708 * 267.32538 * 10 9 7 13 13 H 1.07999 * 119.99762 * 353.27540 * 12 10 9 14 14 C 1.40355 * 119.99865 * 173.27062 * 12 10 9 15 15 N 1.30532 * 119.99766 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99974 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46688 * 60.00397 * 16 14 12 18 18 H 1.48504 * 109.46872 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47190 * 300.00332 * 16 14 12 20 20 H 1.08997 * 109.46901 * 95.56122 * 1 2 3 21 21 H 1.09000 * 109.47167 * 215.55892 * 1 2 3 22 22 H 1.08997 * 109.47389 * 335.56064 * 1 2 3 23 23 H 1.07999 * 119.89435 * 0.04159 * 3 2 1 24 24 H 1.07996 * 119.87779 * 179.97438 * 4 3 2 25 25 H 0.96691 * 114.00399 * 89.99798 * 6 5 4 26 26 H 1.09002 * 109.47536 * 267.92001 * 8 7 5 27 27 H 1.09005 * 109.46681 * 27.92156 * 8 7 5 28 28 H 1.09001 * 109.47243 * 147.91335 * 8 7 5 29 29 H 0.96996 * 119.99527 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1943 0.0000 4 6 3.5804 1.1989 -0.0005 5 6 4.2846 0.0009 -0.0065 6 8 5.6436 0.0119 -0.0122 7 6 3.6030 -1.2034 -0.0012 8 6 4.3652 -2.5034 -0.0013 9 6 2.2063 -1.2100 -0.0005 10 6 1.4705 -2.4923 0.0000 11 8 1.2107 -3.0447 1.0535 12 6 1.0675 -3.0788 -1.2264 13 1 1.2005 -2.5392 -2.1525 14 6 0.4957 -4.3606 -1.2368 15 7 0.3347 -5.0124 -0.1174 16 14 -0.0359 -5.1330 -2.8524 17 1 1.1390 -5.2569 -3.7520 18 1 -0.6059 -6.4796 -2.5933 19 1 -1.0641 -4.2763 -3.4960 20 1 -0.3633 -0.0996 -1.0228 21 1 -0.3633 -0.8360 0.5976 22 1 -0.3634 0.9355 0.4252 23 1 1.6559 2.1288 0.0007 24 1 4.1153 2.1371 -0.0010 25 1 6.0406 0.0129 0.8694 26 1 4.5127 -2.8380 -1.0281 27 1 5.3342 -2.3564 0.4758 28 1 3.8000 -3.2560 0.5485 29 1 -0.0608 -5.8981 -0.1246 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307398011.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:21 Heat of formation + Delta-G solvation = -76.245391 kcal Electronic energy + Delta-G solvation = -14709.412670 eV Core-core repulsion = 12176.064467 eV Total energy + Delta-G solvation = -2533.348203 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.43629 -37.08221 -35.68341 -32.72635 -32.24374 -30.89955 -27.41736 -26.25053 -25.54842 -22.58275 -20.14378 -19.70349 -17.68027 -16.28163 -15.62589 -15.38985 -14.80974 -14.19957 -13.48029 -13.38776 -12.78328 -12.61812 -12.42627 -12.29254 -11.91235 -11.48669 -11.32332 -11.08971 -10.89582 -10.82386 -10.57228 -10.45482 -10.41535 -9.94457 -8.98285 -7.93196 -7.73950 -7.53619 -6.34494 -4.96344 1.83559 1.95778 3.04456 3.11180 3.13850 3.98779 4.08258 4.21306 4.70340 5.29477 5.43534 5.51596 5.57384 5.89442 5.92987 6.15293 6.29534 6.31729 6.34715 6.41428 6.66042 6.75210 6.88837 6.95553 7.09029 7.20254 7.39675 7.46928 8.04627 8.09126 8.73509 8.78011 10.24193 10.45656 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.032732 B = 0.009697 C = 0.008698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.230240 B = 2886.678416 C = 3218.293033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.078 4.078 3 C -0.119 4.119 4 C -0.156 4.156 5 C 0.083 3.917 6 O -0.499 6.499 7 C -0.090 4.090 8 C -0.104 4.104 9 C -0.075 4.075 10 C 0.404 3.596 11 O -0.536 6.536 12 C -0.521 4.521 13 H 0.070 0.930 14 C 0.084 3.916 15 N -0.740 5.740 16 Si 0.905 3.095 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.264 1.264 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.379 0.621 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.778 7.106 -1.105 8.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.175 4.175 5 C 0.039 3.961 6 O -0.308 6.308 7 C -0.091 4.091 8 C -0.160 4.160 9 C -0.076 4.076 10 C 0.299 3.701 11 O -0.425 6.425 12 C -0.552 4.552 13 H 0.088 0.912 14 C -0.139 4.139 15 N -0.369 5.369 16 Si 0.729 3.271 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.189 1.189 20 H 0.089 0.911 21 H 0.093 0.907 22 H 0.073 0.927 23 H 0.136 0.864 24 H 0.136 0.864 25 H 0.233 0.767 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.541 6.709 -1.081 7.663 hybrid contribution -0.023 -0.146 -0.463 0.486 sum 3.519 6.564 -1.544 7.606 Atomic orbital electron populations 1.20718 0.91185 1.01970 1.02638 1.19999 0.96249 0.91931 0.99646 1.20727 0.93378 0.97228 1.02432 1.21196 0.94380 0.96953 1.04944 1.18201 0.82192 0.91967 1.03764 1.84817 1.16581 1.96538 1.32820 1.20242 0.93269 0.94842 1.00743 1.20592 0.98507 0.94446 1.02494 1.21547 0.93107 0.98239 0.94742 1.18012 0.79747 0.82007 0.90366 1.90543 1.55317 1.62391 1.34259 1.20794 1.38236 1.01070 0.95105 0.91193 1.25965 0.93636 0.97007 0.97317 1.69930 1.28766 1.10848 1.27307 0.86444 0.79830 0.78469 0.82341 1.18880 1.20233 1.18855 0.91121 0.90669 0.92704 0.86431 0.86447 0.76706 0.91227 0.92640 0.90571 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 9.53 36.01 0.34 -1.73 15 2 C -0.08 -1.63 5.92 -104.16 -0.62 -2.25 15 3 C -0.12 -2.11 9.66 -39.66 -0.38 -2.49 15 4 C -0.16 -2.69 9.99 -39.28 -0.39 -3.08 15 5 C 0.08 1.55 6.67 -39.26 -0.26 1.29 15 6 O -0.50 -7.98 12.50 -19.44 -0.24 -8.22 15 7 C -0.09 -1.96 5.93 -104.04 -0.62 -2.58 15 8 C -0.10 -2.13 9.38 36.00 0.34 -1.80 15 9 C -0.08 -1.80 5.52 -104.87 -0.58 -2.38 15 10 C 0.40 11.23 3.46 -34.30 -0.12 11.11 15 11 O -0.54 -16.83 15.62 5.13 0.08 -16.75 15 12 C -0.52 -14.30 9.24 -37.43 -0.35 -14.64 15 13 H 0.07 1.83 7.85 -52.49 -0.41 1.41 15 14 C 0.08 2.23 5.50 -17.31 -0.10 2.14 15 15 N -0.74 -20.91 11.76 55.57 0.65 -20.26 15 16 Si 0.91 19.26 29.56 -169.99 -5.03 14.24 15 17 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 18 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 19 H -0.26 -5.49 7.11 56.52 0.40 -5.08 15 20 H 0.07 1.30 8.14 -51.93 -0.42 0.87 15 21 H 0.07 1.64 7.30 -51.93 -0.38 1.26 15 22 H 0.05 0.85 8.05 -51.93 -0.42 0.43 15 23 H 0.12 1.69 8.06 -52.49 -0.42 1.27 15 24 H 0.12 1.68 8.06 -52.49 -0.42 1.25 15 25 H 0.38 4.20 9.06 45.56 0.41 4.61 15 26 H 0.07 1.40 8.14 -51.93 -0.42 0.98 15 27 H 0.05 0.95 7.46 -51.93 -0.39 0.57 15 28 H 0.08 1.77 7.12 -51.93 -0.37 1.40 15 29 H 0.28 7.00 8.29 -40.82 -0.34 6.66 15 LS Contribution 259.07 15.07 3.90 3.90 Total: -1.00 -32.55 259.07 -5.74 -38.28 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -2.38 Total: 5.22 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -2.73 Total: -16.41 kcal Atomic # 7 Polarization: -20.91 SS G_CDS: 0.65 Total: -20.26 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.16 Total: -24.97 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.55 -5.74 -38.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307398011.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.962 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds