Wall clock time and date at job start Mon Mar 30 2020 02:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.33626 * 60.79672 * 9 7 2 11 11 O 1.44429 * 110.37428 * 298.54544 * 9 7 2 12 12 C 1.44420 * 105.27805 * 200.65765 * 11 9 7 13 13 O 1.42906 * 110.37166 * 281.68280 * 12 11 9 14 14 C 1.53001 * 110.37273 * 159.45484 * 12 11 9 15 15 O 1.42891 * 109.47113 * 61.45622 * 14 12 11 16 16 C 1.54485 * 104.80267 * 40.51283 * 12 11 9 17 17 H 1.09001 * 110.50712 * 217.37931 * 16 12 11 18 18 O 1.42892 * 110.51203 * 94.80321 * 16 12 11 19 19 C 1.54480 * 110.37228 * 183.16894 * 9 7 2 20 20 H 1.08995 * 110.51138 * 24.16342 * 19 9 7 21 21 O 1.42907 * 110.50728 * 261.45407 * 19 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 0.96693 * 113.99914 * 298.54410 * 13 12 11 24 24 H 1.09001 * 109.46933 * 181.45426 * 14 12 11 25 25 H 1.08990 * 109.46967 * 301.45234 * 14 12 11 26 26 H 0.96703 * 114.00227 * 179.97438 * 15 14 12 27 27 H 0.96700 * 114.00324 * 180.02562 * 18 16 12 28 28 H 0.96693 * 113.99921 * 61.45441 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6295 -2.5777 -0.8924 11 8 0.4398 -2.6114 1.1891 12 6 0.1766 -4.0235 1.3385 13 8 -0.8540 -4.4354 0.4382 14 6 -0.2196 -4.3418 2.7816 15 8 -1.4168 -3.6360 3.1135 16 6 1.5114 -4.7138 0.9800 17 1 1.3281 -5.6393 0.4341 18 8 2.2740 -4.9727 2.1603 19 6 2.2344 -3.6879 0.0789 20 1 3.1746 -3.3761 0.5335 21 8 2.4628 -4.2364 -1.2208 22 1 -0.4850 0.8401 0.0004 23 1 -1.7031 -3.9969 0.5854 24 1 -0.3895 -5.4136 2.8837 25 1 0.5813 -4.0352 3.4542 26 1 -1.7276 -3.7912 4.0160 27 1 3.1226 -5.4052 1.9933 28 1 2.8602 -3.6147 -1.8458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307464692.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:52 Heat of formation + Delta-G solvation = -238.267701 kcal Electronic energy + Delta-G solvation = -16295.024195 eV Core-core repulsion = 13311.508163 eV Total energy + Delta-G solvation = -2983.516032 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.087 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.43462 -36.57914 -35.70400 -35.29765 -34.26567 -32.45297 -28.95995 -28.67420 -26.07047 -23.04440 -20.90104 -20.02779 -18.00395 -17.07789 -16.67135 -16.26916 -15.95829 -15.04854 -14.66121 -14.59104 -14.23472 -13.67399 -12.87997 -12.56087 -12.40830 -12.27049 -11.86897 -11.56665 -10.97412 -10.92725 -10.38802 -10.33208 -10.05887 -9.79704 -9.58394 -9.53430 -8.89878 -8.69475 -8.29146 -6.09289 -4.25535 3.27427 3.32717 3.34235 3.92430 4.34065 4.45797 4.78235 4.89220 5.16894 5.35118 5.51563 5.65872 5.71810 5.89078 6.24805 6.26569 6.32530 6.40306 7.30019 7.76015 7.79766 7.86933 7.99541 8.09133 8.27694 8.48698 8.84073 9.45748 10.97867 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029292 B = 0.011847 C = 0.009913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.668354 B = 2362.871212 C = 2824.027964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.080 3.920 3 Si 0.897 3.103 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.186 3.814 10 H 0.042 0.958 11 O -0.337 6.337 12 C 0.271 3.729 13 O -0.567 6.567 14 C 0.078 3.922 15 O -0.563 6.563 16 C 0.098 3.902 17 H 0.079 0.921 18 O -0.552 6.552 19 C 0.045 3.955 20 H 0.071 0.929 21 O -0.569 6.569 22 H 0.264 0.736 23 H 0.390 0.610 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.373 0.627 27 H 0.381 0.619 28 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -7.921 3.451 8.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.128 4.128 3 Si 0.724 3.276 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.130 3.870 10 H 0.059 0.941 11 O -0.258 6.258 12 C 0.192 3.808 13 O -0.377 6.377 14 C -0.001 4.001 15 O -0.367 6.367 16 C 0.038 3.962 17 H 0.097 0.903 18 O -0.358 6.358 19 C -0.014 4.014 20 H 0.089 0.911 21 O -0.376 6.376 22 H 0.074 0.926 23 H 0.240 0.760 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.218 0.782 27 H 0.228 0.772 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.468 -8.042 3.304 8.817 hybrid contribution 0.751 1.106 0.215 1.354 sum 2.219 -6.936 3.519 8.088 Atomic orbital electron populations 1.70036 1.06079 1.27019 1.45745 1.25089 0.94840 0.99467 0.93382 0.86602 0.79657 0.82642 0.78741 1.21011 1.19986 1.19988 1.20928 0.92484 0.89647 1.54981 0.91751 1.21215 0.87262 0.92372 0.86166 0.94055 1.89734 1.71238 1.18156 1.46646 1.22538 0.86009 0.85287 0.87011 1.86347 1.23361 1.67976 1.60059 1.22469 0.87344 0.94444 0.95799 1.86549 1.42861 1.72278 1.35013 1.22474 0.90267 0.98149 0.85283 0.90283 1.86413 1.35206 1.82916 1.31287 1.24099 0.99672 0.94263 0.83352 0.91098 1.86284 1.85734 1.42849 1.22730 0.92598 0.76023 0.93061 0.91424 0.78165 0.77175 0.76931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.60 12.94 55.43 0.72 -24.89 15 2 C 0.08 2.26 5.42 -17.82 -0.10 2.17 15 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 15 7 C -0.54 -15.21 8.78 -34.44 -0.30 -15.51 15 8 H 0.06 1.71 7.59 -52.49 -0.40 1.31 15 9 C 0.19 4.94 2.70 -27.11 -0.07 4.86 15 10 H 0.04 1.22 8.09 -51.93 -0.42 0.80 15 11 O -0.34 -9.23 10.43 -62.52 -0.65 -9.88 15 12 C 0.27 6.05 1.27 -25.95 -0.03 6.02 15 13 O -0.57 -12.42 13.11 -62.90 -0.82 -13.24 15 14 C 0.08 1.46 5.93 37.16 0.22 1.68 15 15 O -0.56 -10.30 13.19 -52.33 -0.69 -10.99 15 16 C 0.10 1.97 3.88 -25.16 -0.10 1.87 15 17 H 0.08 1.54 7.94 -51.93 -0.41 1.13 15 18 O -0.55 -9.36 11.68 -35.23 -0.41 -9.77 15 19 C 0.05 0.99 3.83 -25.16 -0.10 0.89 15 20 H 0.07 1.51 7.59 -51.93 -0.39 1.11 15 21 O -0.57 -11.34 13.30 -35.23 -0.47 -11.81 15 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 23 H 0.39 7.83 8.71 45.56 0.40 8.22 15 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.07 1.29 7.35 -51.93 -0.38 0.91 15 26 H 0.37 4.57 9.12 45.56 0.42 4.98 15 27 H 0.38 4.53 9.12 45.56 0.42 4.95 15 28 H 0.38 6.41 9.11 45.56 0.42 6.82 15 LS Contribution 248.37 15.07 3.74 3.74 Total: -1.00 -35.05 248.37 -4.01 -39.06 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.08 Total: 19.57 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.48 Total: 1.99 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.72 Total: -24.89 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -3.05 Total: -55.69 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -35.05 -4.01 -39.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307464692.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.211 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds