Wall clock time and date at job start Mon Mar 30 2020 02:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.33626 * 60.79672 * 9 7 2 11 11 O 1.44429 * 110.37428 * 298.54544 * 9 7 2 12 12 C 1.44420 * 105.27805 * 200.65765 * 11 9 7 13 13 O 1.42906 * 110.37166 * 281.68280 * 12 11 9 14 14 C 1.53001 * 110.37273 * 159.45484 * 12 11 9 15 15 O 1.42891 * 109.47113 * 61.45622 * 14 12 11 16 16 C 1.54485 * 104.80267 * 40.51283 * 12 11 9 17 17 H 1.09001 * 110.50712 * 217.37931 * 16 12 11 18 18 O 1.42892 * 110.51203 * 94.80321 * 16 12 11 19 19 C 1.54480 * 110.37228 * 183.16894 * 9 7 2 20 20 H 1.08995 * 110.51138 * 24.16342 * 19 9 7 21 21 O 1.42907 * 110.50728 * 261.45407 * 19 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 0.96693 * 113.99914 * 298.54410 * 13 12 11 24 24 H 1.09001 * 109.46933 * 181.45426 * 14 12 11 25 25 H 1.08990 * 109.46967 * 301.45234 * 14 12 11 26 26 H 0.96703 * 114.00227 * 179.97438 * 15 14 12 27 27 H 0.96700 * 114.00324 * 180.02562 * 18 16 12 28 28 H 0.96693 * 113.99921 * 61.45441 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6295 -2.5777 -0.8924 11 8 0.4398 -2.6114 1.1891 12 6 0.1766 -4.0235 1.3385 13 8 -0.8540 -4.4354 0.4382 14 6 -0.2196 -4.3418 2.7816 15 8 -1.4168 -3.6360 3.1135 16 6 1.5114 -4.7138 0.9800 17 1 1.3281 -5.6393 0.4341 18 8 2.2740 -4.9727 2.1603 19 6 2.2344 -3.6879 0.0789 20 1 3.1746 -3.3761 0.5335 21 8 2.4628 -4.2364 -1.2208 22 1 -0.4850 0.8401 0.0004 23 1 -1.7031 -3.9969 0.5854 24 1 -0.3895 -5.4136 2.8837 25 1 0.5813 -4.0352 3.4542 26 1 -1.7276 -3.7912 4.0160 27 1 3.1226 -5.4052 1.9933 28 1 2.8602 -3.6147 -1.8458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307464692.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:52 Heat of formation + Delta-G solvation = -274.252052 kcal Electronic energy + Delta-G solvation = -16296.584594 eV Core-core repulsion = 13311.508163 eV Total energy + Delta-G solvation = -2985.076430 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.087 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.14115 -38.11581 -37.21020 -36.85497 -36.05997 -34.54353 -30.66293 -30.46290 -27.89511 -24.85800 -22.74097 -21.67127 -19.66840 -18.70222 -18.48976 -17.94232 -17.54173 -16.78249 -16.44997 -16.36748 -15.86926 -15.23709 -14.60420 -14.37328 -14.16125 -13.89325 -13.45926 -13.28029 -12.78240 -12.73600 -12.39076 -12.15748 -11.75703 -11.37882 -11.16825 -11.01967 -10.85964 -10.69222 -10.26685 -8.21649 -6.45769 1.39903 1.43486 1.51267 2.35739 2.41709 2.93874 3.05893 3.29698 3.40466 3.62985 3.97813 4.07703 4.20995 4.26646 4.51696 4.62201 4.73908 4.80621 5.24350 5.62255 5.91578 6.15880 6.58404 6.64508 6.75984 6.86890 6.88784 7.30663 8.86401 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029292 B = 0.011847 C = 0.009913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.668354 B = 2362.871212 C = 2824.027964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.022 3.978 3 Si 0.970 3.030 4 H -0.284 1.284 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.180 3.820 10 H -0.002 1.002 11 O -0.374 6.374 12 C 0.251 3.749 13 O -0.574 6.574 14 C 0.086 3.914 15 O -0.584 6.584 16 C 0.111 3.889 17 H 0.089 0.911 18 O -0.549 6.549 19 C 0.056 3.944 20 H 0.080 0.920 21 O -0.568 6.568 22 H 0.264 0.736 23 H 0.393 0.607 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.398 0.602 27 H 0.405 0.595 28 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 -8.429 4.164 9.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.182 4.182 3 Si 0.793 3.207 4 H -0.209 1.209 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.598 4.598 8 H 0.093 0.907 9 C 0.124 3.876 10 H 0.016 0.984 11 O -0.295 6.295 12 C 0.172 3.828 13 O -0.385 6.385 14 C 0.008 3.992 15 O -0.393 6.393 16 C 0.050 3.950 17 H 0.107 0.893 18 O -0.358 6.358 19 C -0.004 4.004 20 H 0.097 0.903 21 O -0.376 6.376 22 H 0.073 0.927 23 H 0.244 0.756 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.248 0.752 27 H 0.256 0.744 28 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.812 -8.578 4.025 9.884 hybrid contribution 0.309 1.189 0.002 1.228 sum 3.121 -7.390 4.026 8.976 Atomic orbital electron populations 1.70198 1.07976 1.27847 1.47379 1.26065 0.95676 1.03564 0.92847 0.85451 0.78267 0.77568 0.79369 1.20921 1.19349 1.18307 1.21384 0.93224 0.90700 1.54492 0.90688 1.21075 0.87606 0.94214 0.84711 0.98436 1.89644 1.71749 1.21741 1.46355 1.23106 0.87147 0.83403 0.89179 1.86322 1.23702 1.67796 1.60630 1.22368 0.87461 0.96033 0.93295 1.86491 1.42686 1.72686 1.37432 1.22228 0.89360 0.97586 0.85786 0.89307 1.86380 1.36591 1.83231 1.29627 1.23920 0.98809 0.93177 0.84490 0.90270 1.86266 1.85818 1.43076 1.22468 0.92749 0.75634 0.89958 0.91688 0.75190 0.74357 0.75492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.16 12.94 21.45 0.28 -54.88 15 2 C 0.02 1.23 5.42 84.66 0.46 1.69 15 3 Si 0.97 43.62 29.54 68.60 2.03 45.65 15 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 5 H -0.27 -11.72 7.11 99.48 0.71 -11.02 15 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 7 C -0.56 -31.57 8.78 25.60 0.22 -31.34 15 8 H 0.08 3.92 7.59 -2.91 -0.02 3.90 15 9 C 0.18 9.72 2.70 30.35 0.08 9.81 15 10 H 0.00 -0.12 8.09 -2.39 -0.02 -0.14 15 11 O -0.37 -20.72 10.43 -122.89 -1.28 -22.00 15 12 C 0.25 11.01 1.27 31.10 0.04 11.05 15 13 O -0.57 -25.14 13.11 -122.52 -1.61 -26.75 15 14 C 0.09 3.10 5.93 71.98 0.43 3.52 15 15 O -0.58 -20.69 13.19 -132.63 -1.75 -22.44 15 16 C 0.11 4.24 3.88 31.61 0.12 4.36 15 17 H 0.09 3.25 7.94 -2.39 -0.02 3.23 15 18 O -0.55 -16.95 11.68 -148.98 -1.74 -18.69 15 19 C 0.06 2.37 3.83 31.61 0.12 2.49 15 20 H 0.08 3.22 7.59 -2.39 -0.02 3.21 15 21 O -0.57 -21.91 13.30 -148.98 -1.98 -23.89 15 22 H 0.26 15.28 8.31 -92.71 -0.77 14.51 15 23 H 0.39 16.09 8.71 -74.06 -0.64 15.44 15 24 H 0.08 2.43 8.14 -2.39 -0.02 2.41 15 25 H 0.06 2.35 7.35 -2.39 -0.02 2.33 15 26 H 0.40 9.01 9.12 -74.06 -0.68 8.34 15 27 H 0.40 8.14 9.12 -74.06 -0.68 7.46 15 28 H 0.40 12.85 9.11 -74.06 -0.67 12.17 15 Total: -1.00 -75.61 248.37 -6.02 -81.63 By element: Atomic # 1 Polarization: 41.23 SS G_CDS: -1.44 Total: 39.79 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 1.48 Total: 1.59 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.28 Total: -54.88 kcal Atomic # 8 Polarization: -105.41 SS G_CDS: -8.36 Total: -113.77 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -75.61 -6.02 -81.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307464692.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.625 kcal (2) G-P(sol) polarization free energy of solvation -75.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds