Wall clock time and date at job start Mon Mar 30 2020 02:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99895 * 2 1 4 4 H 1.48495 * 109.47456 * 239.99956 * 3 2 1 5 5 H 1.48503 * 109.47056 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46753 * 119.99741 * 3 2 1 7 7 C 1.37881 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00425 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99774 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.41366 * 60.85540 * 9 7 2 11 11 O 1.44427 * 110.37196 * 298.54894 * 9 7 2 12 12 C 1.44426 * 105.27356 * 200.65288 * 11 9 7 13 13 O 1.42898 * 110.37196 * 281.68108 * 12 11 9 14 14 C 1.53004 * 110.36828 * 159.45229 * 12 11 9 15 15 O 1.42900 * 109.47276 * 61.45981 * 14 12 11 16 16 C 1.54475 * 104.80234 * 40.51337 * 12 11 9 17 17 H 1.09002 * 110.51057 * 94.66267 * 16 12 11 18 18 O 1.42895 * 110.51096 * 217.37369 * 16 12 11 19 19 C 1.54474 * 110.37366 * 183.16595 * 9 7 2 20 20 H 1.08999 * 110.50826 * 24.16371 * 19 9 7 21 21 O 1.42897 * 110.62930 * 261.51363 * 19 9 7 22 22 H 0.96994 * 120.00312 * 0.02562 * 1 2 3 23 23 H 0.96699 * 114.00014 * 298.54265 * 13 12 11 24 24 H 1.09001 * 109.46559 * 181.45657 * 14 12 11 25 25 H 1.08996 * 109.47281 * 301.45303 * 14 12 11 26 26 H 0.96694 * 114.00042 * 179.97438 * 15 14 12 27 27 H 0.96701 * 113.99893 * 179.97438 * 18 16 12 28 28 H 0.96700 * 113.99973 * 65.28812 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 1 0.6299 -2.5795 -0.8926 11 8 0.4399 -2.6114 1.1891 12 6 0.1768 -4.0236 1.3383 13 8 -0.8537 -4.4355 0.4381 14 6 -0.2194 -4.3419 2.7815 15 8 -1.4168 -3.6361 3.1135 16 6 1.5115 -4.7138 0.9799 17 1 2.0943 -4.9091 1.8801 18 8 1.2714 -5.9271 0.2643 19 6 2.2346 -3.6879 0.0788 20 1 3.1748 -3.3759 0.5334 21 8 2.4659 -4.2374 -1.2198 22 1 -0.4850 0.8400 -0.0004 23 1 -1.7030 -3.9970 0.5853 24 1 -0.3892 -5.4137 2.8836 25 1 0.5815 -4.0352 3.4542 26 1 -1.7274 -3.7913 4.0159 27 1 2.0758 -6.4017 0.0137 28 1 2.9174 -3.6353 -1.8270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307464697.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:54 Heat of formation + Delta-G solvation = -236.120700 kcal Electronic energy + Delta-G solvation = -16302.671946 eV Core-core repulsion = 13319.249015 eV Total energy + Delta-G solvation = -2983.422931 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.087 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.36161 -36.62795 -35.44211 -35.18180 -34.09188 -32.47678 -29.20601 -28.67900 -25.98879 -22.96012 -20.96610 -19.99012 -17.71750 -17.13532 -16.72305 -16.22260 -15.94641 -15.21458 -14.66726 -14.49644 -14.16783 -13.33154 -12.98346 -12.63027 -12.33189 -11.94379 -11.90849 -11.50750 -10.94625 -10.91984 -10.36659 -10.26439 -10.02022 -9.80054 -9.69145 -9.39120 -8.85967 -8.68299 -8.29381 -6.09824 -4.26882 3.26182 3.31600 3.32715 4.23925 4.31293 4.40204 4.74779 4.86243 5.18952 5.29015 5.39418 5.43270 5.58650 5.82256 6.09687 6.30359 6.36687 6.44301 7.34323 7.75691 7.85151 7.96061 7.99724 8.13609 8.36077 8.56586 8.83918 9.44702 10.97048 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.011848 C = 0.009424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.434896 B = 2362.738567 C = 2970.578993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.080 3.920 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.187 3.813 10 H 0.043 0.957 11 O -0.341 6.341 12 C 0.267 3.733 13 O -0.547 6.547 14 C 0.070 3.930 15 O -0.556 6.556 16 C 0.101 3.899 17 H 0.072 0.928 18 O -0.529 6.529 19 C 0.043 3.957 20 H 0.064 0.936 21 O -0.558 6.558 22 H 0.264 0.736 23 H 0.378 0.622 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.373 0.627 27 H 0.371 0.629 28 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.568 -7.512 4.508 9.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.128 4.128 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.132 3.868 10 H 0.061 0.939 11 O -0.262 6.262 12 C 0.187 3.813 13 O -0.355 6.355 14 C -0.009 4.009 15 O -0.361 6.361 16 C 0.040 3.960 17 H 0.089 0.911 18 O -0.333 6.333 19 C -0.017 4.017 20 H 0.082 0.918 21 O -0.364 6.364 22 H 0.074 0.926 23 H 0.226 0.774 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.219 0.781 27 H 0.217 0.783 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.939 -7.724 4.149 8.980 hybrid contribution 0.938 1.296 0.552 1.692 sum 2.878 -6.428 4.701 8.468 Atomic orbital electron populations 1.70038 1.06079 1.27027 1.45611 1.25093 0.94824 0.99452 0.93400 0.86614 0.79659 0.82704 0.78727 1.19973 1.21008 1.20022 1.20950 0.92473 0.89719 1.55136 0.91743 1.21235 0.87260 0.92203 0.86143 0.93920 1.89726 1.71446 1.18080 1.46956 1.22837 0.86667 0.85007 0.86798 1.86598 1.22559 1.67268 1.59086 1.22689 0.87652 0.94950 0.95595 1.86582 1.42426 1.71968 1.35077 1.23044 0.94298 0.85126 0.93511 0.91059 1.86596 1.34585 1.35080 1.77019 1.24016 0.98978 0.94564 0.84095 0.91812 1.86297 1.82247 1.44394 1.23443 0.92581 0.77404 0.92506 0.92679 0.78063 0.78297 0.77329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.52 12.94 55.43 0.72 -24.80 15 2 C 0.08 2.26 5.42 -17.82 -0.10 2.16 15 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 15 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 7 C -0.55 -15.12 8.78 -34.44 -0.30 -15.42 15 8 H 0.06 1.68 7.59 -52.49 -0.40 1.28 15 9 C 0.19 4.97 2.72 -27.11 -0.07 4.90 15 10 H 0.04 1.29 8.09 -51.93 -0.42 0.87 15 11 O -0.34 -9.17 10.43 -62.52 -0.65 -9.82 15 12 C 0.27 5.91 1.23 -25.95 -0.03 5.88 15 13 O -0.55 -12.70 12.43 -68.00 -0.85 -13.54 15 14 C 0.07 1.23 6.39 37.16 0.24 1.47 15 15 O -0.56 -9.81 13.19 -52.32 -0.69 -10.50 15 16 C 0.10 2.00 3.97 -25.16 -0.10 1.90 15 17 H 0.07 1.19 7.87 -51.93 -0.41 0.78 15 18 O -0.53 -10.21 11.95 -65.25 -0.78 -10.99 15 19 C 0.04 0.93 4.01 -25.16 -0.10 0.83 15 20 H 0.06 1.30 7.72 -51.93 -0.40 0.90 15 21 O -0.56 -11.18 12.33 -56.40 -0.70 -11.88 15 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 23 H 0.38 8.05 8.71 45.56 0.40 8.45 15 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.05 0.89 8.13 -51.93 -0.42 0.46 15 26 H 0.37 4.27 9.12 45.56 0.42 4.69 15 27 H 0.37 5.52 8.86 45.56 0.40 5.92 15 28 H 0.38 6.39 9.12 45.56 0.42 6.81 15 LS Contribution 248.31 15.07 3.74 3.74 Total: -1.00 -35.70 248.31 -4.67 -40.36 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.02 Total: 19.69 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.47 Total: 1.71 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.72 Total: -24.80 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -3.66 Total: -56.73 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -35.70 -4.67 -40.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307464697.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.756 kcal (2) G-P(sol) polarization free energy of solvation -35.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds