Wall clock time and date at job start Mon Mar 30 2020 02:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99895 * 2 1 4 4 H 1.48495 * 109.47456 * 239.99956 * 3 2 1 5 5 H 1.48503 * 109.47056 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46753 * 119.99741 * 3 2 1 7 7 C 1.37881 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00425 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99774 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.41366 * 60.85540 * 9 7 2 11 11 O 1.44427 * 110.37196 * 298.54894 * 9 7 2 12 12 C 1.44426 * 105.27356 * 200.65288 * 11 9 7 13 13 O 1.42898 * 110.37196 * 281.68108 * 12 11 9 14 14 C 1.53004 * 110.36828 * 159.45229 * 12 11 9 15 15 O 1.42900 * 109.47276 * 61.45981 * 14 12 11 16 16 C 1.54475 * 104.80234 * 40.51337 * 12 11 9 17 17 H 1.09002 * 110.51057 * 94.66267 * 16 12 11 18 18 O 1.42895 * 110.51096 * 217.37369 * 16 12 11 19 19 C 1.54474 * 110.37366 * 183.16595 * 9 7 2 20 20 H 1.08999 * 110.50826 * 24.16371 * 19 9 7 21 21 O 1.42897 * 110.62930 * 261.51363 * 19 9 7 22 22 H 0.96994 * 120.00312 * 0.02562 * 1 2 3 23 23 H 0.96699 * 114.00014 * 298.54265 * 13 12 11 24 24 H 1.09001 * 109.46559 * 181.45657 * 14 12 11 25 25 H 1.08996 * 109.47281 * 301.45303 * 14 12 11 26 26 H 0.96694 * 114.00042 * 179.97438 * 15 14 12 27 27 H 0.96701 * 113.99893 * 179.97438 * 18 16 12 28 28 H 0.96700 * 113.99973 * 65.28812 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 1 0.6299 -2.5795 -0.8926 11 8 0.4399 -2.6114 1.1891 12 6 0.1768 -4.0236 1.3383 13 8 -0.8537 -4.4355 0.4381 14 6 -0.2194 -4.3419 2.7815 15 8 -1.4168 -3.6361 3.1135 16 6 1.5115 -4.7138 0.9799 17 1 2.0943 -4.9091 1.8801 18 8 1.2714 -5.9271 0.2643 19 6 2.2346 -3.6879 0.0788 20 1 3.1748 -3.3759 0.5334 21 8 2.4659 -4.2374 -1.2198 22 1 -0.4850 0.8400 -0.0004 23 1 -1.7030 -3.9970 0.5853 24 1 -0.3892 -5.4137 2.8836 25 1 0.5815 -4.0352 3.4542 26 1 -1.7274 -3.7913 4.0159 27 1 2.0758 -6.4017 0.0137 28 1 2.9174 -3.6353 -1.8270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307464697.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:54 Heat of formation + Delta-G solvation = -271.404590 kcal Electronic energy + Delta-G solvation = -16304.201970 eV Core-core repulsion = 13319.249015 eV Total energy + Delta-G solvation = -2984.952955 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.087 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.05791 -38.11106 -37.06182 -36.73481 -35.85129 -34.55688 -30.83227 -30.51495 -27.77974 -24.73196 -22.77440 -21.63004 -19.43076 -18.68739 -18.44884 -17.90713 -17.57048 -16.98311 -16.41195 -16.31233 -15.68626 -14.92946 -14.64415 -14.44783 -14.06978 -13.63886 -13.50149 -13.16658 -12.77696 -12.72771 -12.36613 -12.11765 -11.56968 -11.44615 -11.04227 -11.02156 -10.84812 -10.61733 -10.24032 -8.20764 -6.45750 1.40509 1.43815 1.51819 2.36678 2.77005 2.86483 3.05686 3.24438 3.47352 3.72900 3.89026 3.97272 4.19926 4.32432 4.42276 4.60954 4.74942 4.90570 5.26575 5.62982 5.93893 6.17990 6.60376 6.72437 6.79819 6.89458 7.01170 7.31293 8.87138 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.011848 C = 0.009424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.434896 B = 2362.738567 C = 2970.578993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.020 3.980 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.561 4.561 8 H 0.078 0.922 9 C 0.182 3.818 10 H -0.012 1.012 11 O -0.374 6.374 12 C 0.244 3.756 13 O -0.565 6.565 14 C 0.077 3.923 15 O -0.583 6.583 16 C 0.105 3.895 17 H 0.116 0.884 18 O -0.542 6.542 19 C 0.050 3.950 20 H 0.082 0.918 21 O -0.560 6.560 22 H 0.263 0.737 23 H 0.379 0.621 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.399 0.601 27 H 0.391 0.609 28 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.218 -8.006 5.624 10.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.183 4.183 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.598 4.598 8 H 0.097 0.903 9 C 0.126 3.874 10 H 0.005 0.995 11 O -0.295 6.295 12 C 0.165 3.835 13 O -0.373 6.373 14 C -0.002 4.002 15 O -0.391 6.391 16 C 0.044 3.956 17 H 0.133 0.867 18 O -0.349 6.349 19 C -0.009 4.009 20 H 0.099 0.901 21 O -0.367 6.367 22 H 0.072 0.928 23 H 0.227 0.773 24 H 0.104 0.896 25 H 0.092 0.908 26 H 0.250 0.750 27 H 0.240 0.760 28 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.615 -8.247 5.272 10.434 hybrid contribution 0.375 1.367 0.174 1.428 sum 3.990 -6.880 5.446 9.639 Atomic orbital electron populations 1.70212 1.08093 1.27825 1.47454 1.26092 0.95632 1.03657 0.92870 0.85438 0.78216 0.77480 0.79434 1.18505 1.21121 1.18959 1.21419 0.93325 0.90608 1.54434 0.90348 1.21055 0.87525 0.94326 0.84449 0.99459 1.89635 1.71875 1.21657 1.46342 1.23553 0.87461 0.83179 0.89352 1.86567 1.23066 1.67293 1.60360 1.22639 0.88285 0.96430 0.92810 1.86520 1.42619 1.72448 1.37559 1.23132 0.93094 0.84694 0.94640 0.86703 1.86552 1.36376 1.34747 1.77219 1.23913 0.98471 0.93418 0.85147 0.90058 1.86276 1.82438 1.44635 1.23387 0.92806 0.77276 0.89646 0.90775 0.75024 0.76022 0.75966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.42 12.94 21.45 0.28 -55.14 15 2 C 0.02 1.16 5.42 84.66 0.46 1.62 15 3 Si 0.97 43.21 29.54 68.60 2.03 45.24 15 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 15 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 15 7 C -0.56 -31.19 8.78 25.60 0.22 -30.96 15 8 H 0.08 4.00 7.59 -2.91 -0.02 3.98 15 9 C 0.18 9.85 2.72 30.35 0.08 9.94 15 10 H -0.01 -0.78 8.09 -2.38 -0.02 -0.79 15 11 O -0.37 -20.32 10.43 -122.89 -1.28 -21.60 15 12 C 0.24 10.57 1.23 31.10 0.04 10.61 15 13 O -0.56 -26.49 12.43 -117.65 -1.46 -27.96 15 14 C 0.08 2.52 6.39 71.98 0.46 2.98 15 15 O -0.58 -19.76 13.19 -132.64 -1.75 -21.51 15 16 C 0.10 3.91 3.97 31.61 0.13 4.04 15 17 H 0.12 3.31 7.87 -2.39 -0.02 3.29 15 18 O -0.54 -19.61 11.95 -120.28 -1.44 -21.05 15 19 C 0.05 2.11 4.01 31.61 0.13 2.24 15 20 H 0.08 3.12 7.72 -2.39 -0.02 3.10 15 21 O -0.56 -21.80 12.33 -128.74 -1.59 -23.39 15 22 H 0.26 15.30 8.31 -92.71 -0.77 14.53 15 23 H 0.38 16.75 8.71 -74.06 -0.64 16.10 15 24 H 0.09 2.32 8.14 -2.39 -0.02 2.30 15 25 H 0.07 2.14 8.13 -2.39 -0.02 2.12 15 26 H 0.40 8.30 9.12 -74.06 -0.68 7.63 15 27 H 0.39 10.45 8.86 -74.06 -0.66 9.80 15 28 H 0.39 12.86 9.12 -74.06 -0.68 12.18 15 Total: -1.00 -78.26 248.31 -5.12 -83.38 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: -1.42 Total: 41.56 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 1.52 Total: 0.46 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.28 Total: -55.14 kcal Atomic # 8 Polarization: -107.98 SS G_CDS: -7.52 Total: -115.50 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -78.26 -5.12 -83.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307464697.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.028 kcal (2) G-P(sol) polarization free energy of solvation -78.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds