Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.37962 * 120.07387 * 2 1 4 4 C 1.38351 * 120.14645 * 179.97438 * 3 2 1 5 5 C 1.38394 * 120.30373 * 0.02562 * 4 3 2 6 6 C 1.37927 * 120.14601 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.07098 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46869 * 264.99593 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 C 1.39606 * 120.07527 * 180.26171 * 2 1 3 17 17 C 1.47732 * 120.14910 * 0.02562 * 16 2 1 18 18 O 1.21470 * 119.99618 * 270.24922 * 17 16 2 19 19 O 1.34703 * 120.00138 * 90.25163 * 17 16 2 20 20 H 1.08993 * 109.47071 * 89.99658 * 1 2 3 21 21 H 1.08998 * 109.46908 * 209.99984 * 1 2 3 22 22 H 1.09000 * 109.46592 * 329.99423 * 1 2 3 23 23 H 1.07992 * 119.93004 * 359.96496 * 3 2 1 24 24 H 1.07992 * 119.85007 * 180.02562 * 4 3 2 25 25 H 1.08001 * 119.92668 * 180.02562 * 5 4 3 26 26 H 1.09004 * 109.47210 * 144.99887 * 7 6 5 27 27 H 1.08994 * 109.47551 * 24.99539 * 7 6 5 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 0.96702 * 116.99598 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5819 1.1956 0.0005 5 6 4.2818 0.0017 0.0005 6 6 3.6031 -1.1990 0.0005 7 6 4.3668 -2.4982 0.0011 8 6 4.5151 -2.9943 -1.4141 9 1 4.0983 -2.4255 -2.2322 10 6 5.1882 -4.1712 -1.6652 11 7 5.6960 -4.8635 -0.6690 12 14 5.3786 -4.7821 -3.4201 13 1 6.1151 -3.7702 -4.2194 14 1 6.1354 -6.0599 -3.4199 15 1 4.0364 -5.0024 -4.0160 16 6 2.2067 -1.2081 -0.0055 17 6 1.4731 -2.4904 -0.0119 18 8 1.1671 -3.0202 1.0374 19 8 1.1435 -3.0719 -1.1814 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5139 23 1 1.6585 2.1292 -0.0006 24 1 4.1183 2.1330 0.0010 25 1 5.3617 0.0102 0.0014 26 1 3.8250 -3.2379 0.5906 27 1 5.3537 -2.3393 0.4357 28 1 6.1693 -5.6917 -0.8456 29 1 0.6640 -3.9104 -1.1349 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307629269.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = -84.087295 kcal Electronic energy + Delta-G solvation = -14670.121976 eV Core-core repulsion = 12136.433723 eV Total energy + Delta-G solvation = -2533.688253 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.99122 -38.21318 -35.37231 -33.86259 -32.34795 -31.32430 -27.72065 -26.58510 -24.07523 -22.97644 -20.40604 -19.93813 -17.58212 -16.66073 -16.31614 -15.71354 -15.04217 -14.46287 -13.89585 -13.67518 -13.49986 -12.69129 -12.54927 -12.41123 -12.26089 -11.59727 -11.40835 -11.14893 -11.00446 -10.83621 -10.60451 -10.54066 -9.99751 -9.65525 -9.51179 -8.45953 -8.34791 -7.99137 -6.07345 -4.11878 1.58291 1.89794 2.77703 3.30963 3.34871 3.38413 3.69300 4.18185 4.44127 5.08807 5.16244 5.28131 5.47420 5.53908 5.72998 5.82788 5.89970 5.98310 6.08879 6.34620 6.55306 6.80381 6.86276 6.94482 7.05246 7.36367 7.48975 7.62958 7.87616 8.21900 8.49147 8.92653 9.52044 11.02709 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029629 B = 0.010146 C = 0.008842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.805323 B = 2759.156833 C = 3165.864222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.053 4.053 3 C -0.150 4.150 4 C -0.097 4.097 5 C -0.131 4.131 6 C 0.009 3.991 7 C 0.039 3.961 8 C -0.510 4.510 9 H 0.060 0.940 10 C 0.060 3.940 11 N -0.893 5.893 12 Si 0.898 3.102 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.275 1.275 16 C -0.117 4.117 17 C 0.555 3.445 18 O -0.522 6.522 19 O -0.497 6.497 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.120 0.880 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.031 0.969 27 H 0.036 0.964 28 H 0.263 0.737 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.534 9.118 -0.370 11.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.053 4.053 3 C -0.168 4.168 4 C -0.115 4.115 5 C -0.149 4.149 6 C 0.008 3.992 7 C 0.002 3.998 8 C -0.549 4.549 9 H 0.079 0.921 10 C -0.142 4.142 11 N -0.531 5.531 12 Si 0.725 3.275 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.200 1.200 16 C -0.118 4.118 17 C 0.399 3.601 18 O -0.412 6.412 19 O -0.306 6.306 20 H 0.092 0.908 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.138 0.862 24 H 0.137 0.863 25 H 0.145 0.855 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -7.303 9.179 -0.068 11.730 hybrid contribution -0.043 -1.005 -0.898 1.348 sum -7.347 8.174 -0.966 11.033 Atomic orbital electron populations 1.20850 0.91432 1.02767 1.02465 1.19711 0.95464 0.91830 0.98295 1.20672 0.94234 0.96504 1.05436 1.21226 0.94088 0.97938 0.98288 1.21032 1.00294 0.91304 1.02303 1.20710 0.91205 0.98242 0.89006 1.18511 0.95251 0.87570 0.98448 1.20932 1.35730 1.06909 0.91283 0.92149 1.25002 0.95332 0.96504 0.97352 1.69960 1.36611 1.15599 1.30976 0.86557 0.78369 0.77993 0.84551 1.20098 1.21273 1.20010 1.18779 0.93556 0.89679 1.09751 1.20796 0.74152 0.84247 0.80930 1.90841 1.52457 1.64341 1.33541 1.84730 1.70638 1.40172 1.35086 0.90802 0.91850 0.91166 0.86166 0.86253 0.85454 0.95091 0.94546 0.92701 0.74007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.62 36.01 0.35 -1.28 15 2 C -0.05 -0.91 5.91 -104.21 -0.62 -1.52 15 3 C -0.15 -2.27 9.69 -39.64 -0.38 -2.66 15 4 C -0.10 -1.51 10.04 -39.48 -0.40 -1.91 15 5 C -0.13 -2.48 9.67 -39.64 -0.38 -2.86 15 6 C 0.01 0.19 5.10 -104.21 -0.53 -0.34 15 7 C 0.04 1.02 4.62 -29.03 -0.13 0.89 15 8 C -0.51 -14.25 9.09 -34.44 -0.31 -14.56 15 9 H 0.06 1.68 7.74 -52.49 -0.41 1.27 15 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 11 N -0.89 -26.48 13.29 55.43 0.74 -25.74 15 12 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 15 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 16 C -0.12 -2.44 5.75 -104.98 -0.60 -3.04 15 17 C 0.56 11.89 4.81 34.61 0.17 12.06 15 18 O -0.52 -12.14 17.89 -19.24 -0.34 -12.48 15 19 O -0.50 -9.50 13.44 -40.50 -0.54 -10.04 15 20 H 0.07 0.92 8.14 -51.93 -0.42 0.49 15 21 H 0.06 0.93 7.09 -51.93 -0.37 0.56 15 22 H 0.07 0.78 8.09 -51.93 -0.42 0.36 15 23 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 24 H 0.12 1.45 8.06 -52.49 -0.42 1.02 15 25 H 0.13 2.26 8.06 -52.49 -0.42 1.83 15 26 H 0.03 0.89 7.29 -51.93 -0.38 0.51 15 27 H 0.04 0.98 8.05 -51.93 -0.42 0.57 15 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 29 H 0.40 5.68 9.11 45.56 0.42 6.09 15 LS Contribution 263.23 15.07 3.97 3.97 Total: -1.00 -32.69 263.23 -6.56 -39.24 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -2.40 Total: 2.20 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.95 Total: -13.63 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.89 Total: -22.53 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.69 -6.56 -39.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307629269.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.846 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds