Wall clock time and date at job start Mon Mar 30 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.37962 * 120.07387 * 2 1 4 4 C 1.38351 * 120.14645 * 179.97438 * 3 2 1 5 5 C 1.38394 * 120.30373 * 0.02562 * 4 3 2 6 6 C 1.37927 * 120.14601 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.07098 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46869 * 264.99593 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 C 1.39606 * 120.07527 * 180.26171 * 2 1 3 17 17 C 1.47732 * 120.14910 * 0.02562 * 16 2 1 18 18 O 1.21470 * 119.99618 * 270.24922 * 17 16 2 19 19 O 1.34703 * 120.00138 * 90.25163 * 17 16 2 20 20 H 1.08993 * 109.47071 * 89.99658 * 1 2 3 21 21 H 1.08998 * 109.46908 * 209.99984 * 1 2 3 22 22 H 1.09000 * 109.46592 * 329.99423 * 1 2 3 23 23 H 1.07992 * 119.93004 * 359.96496 * 3 2 1 24 24 H 1.07992 * 119.85007 * 180.02562 * 4 3 2 25 25 H 1.08001 * 119.92668 * 180.02562 * 5 4 3 26 26 H 1.09004 * 109.47210 * 144.99887 * 7 6 5 27 27 H 1.08994 * 109.47551 * 24.99539 * 7 6 5 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 0.96702 * 116.99598 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5819 1.1956 0.0005 5 6 4.2818 0.0017 0.0005 6 6 3.6031 -1.1990 0.0005 7 6 4.3668 -2.4982 0.0011 8 6 4.5151 -2.9943 -1.4141 9 1 4.0983 -2.4255 -2.2322 10 6 5.1882 -4.1712 -1.6652 11 7 5.6960 -4.8635 -0.6690 12 14 5.3786 -4.7821 -3.4201 13 1 6.1151 -3.7702 -4.2194 14 1 6.1354 -6.0599 -3.4199 15 1 4.0364 -5.0024 -4.0160 16 6 2.2067 -1.2081 -0.0055 17 6 1.4731 -2.4904 -0.0119 18 8 1.1671 -3.0202 1.0374 19 8 1.1435 -3.0719 -1.1814 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5139 23 1 1.6585 2.1292 -0.0006 24 1 4.1183 2.1330 0.0010 25 1 5.3617 0.0102 0.0014 26 1 3.8250 -3.2379 0.5906 27 1 5.3537 -2.3393 0.4357 28 1 6.1693 -5.6917 -0.8456 29 1 0.6640 -3.9104 -1.1349 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307629269.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:27 Heat of formation + Delta-G solvation = -105.372274 kcal Electronic energy + Delta-G solvation = -14671.044962 eV Core-core repulsion = 12136.433723 eV Total energy + Delta-G solvation = -2534.611239 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.55562 -39.69696 -37.01457 -35.73382 -33.93934 -32.91465 -29.51047 -27.94269 -25.78370 -24.74928 -21.86443 -21.48168 -19.20824 -18.51555 -18.17523 -17.24593 -16.73591 -16.08106 -15.43421 -15.14652 -14.79685 -14.38793 -14.16597 -13.99993 -13.70365 -13.18215 -13.01093 -12.72199 -12.63202 -12.50424 -12.45471 -12.24215 -11.65889 -11.59761 -11.38911 -10.64045 -9.74699 -9.47153 -8.23505 -6.37328 0.19458 0.49888 1.12245 1.38751 1.41893 1.50341 2.23282 2.37939 2.81434 3.07825 3.84093 3.95656 4.16011 4.32116 4.42578 4.55660 4.68954 4.74824 4.82618 5.04844 5.08011 5.23219 5.28526 5.45853 5.52507 5.56669 5.68865 5.82534 6.01908 6.12269 6.73763 6.96167 7.31529 8.86512 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029629 B = 0.010146 C = 0.008842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.805323 B = 2759.156833 C = 3165.864222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.055 4.055 3 C -0.134 4.134 4 C -0.081 4.081 5 C -0.145 4.145 6 C -0.031 4.031 7 C 0.051 3.949 8 C -0.520 4.520 9 H 0.059 0.941 10 C 0.005 3.995 11 N -0.932 5.932 12 Si 0.967 3.033 13 H -0.264 1.264 14 H -0.282 1.282 15 H -0.266 1.266 16 C -0.148 4.148 17 C 0.555 3.445 18 O -0.554 6.554 19 O -0.498 6.498 20 H 0.089 0.911 21 H 0.045 0.955 22 H 0.105 0.895 23 H 0.171 0.829 24 H 0.165 0.835 25 H 0.128 0.872 26 H -0.011 1.011 27 H 0.012 0.988 28 H 0.266 0.734 29 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.588 11.807 -1.807 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.055 4.055 3 C -0.151 4.151 4 C -0.099 4.099 5 C -0.163 4.163 6 C -0.031 4.031 7 C 0.014 3.986 8 C -0.558 4.558 9 H 0.077 0.923 10 C -0.193 4.193 11 N -0.572 5.572 12 Si 0.791 3.209 13 H -0.189 1.189 14 H -0.207 1.207 15 H -0.191 1.191 16 C -0.149 4.149 17 C 0.400 3.600 18 O -0.446 6.446 19 O -0.310 6.310 20 H 0.108 0.892 21 H 0.064 0.936 22 H 0.124 0.876 23 H 0.188 0.812 24 H 0.183 0.817 25 H 0.146 0.854 26 H 0.007 0.993 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -8.371 11.872 -1.519 14.606 hybrid contribution 0.238 -1.764 -0.419 1.828 sum -8.133 10.109 -1.938 13.118 Atomic orbital electron populations 1.20931 0.88936 1.03681 1.03724 1.20203 0.97380 0.91063 0.96901 1.21279 0.94210 0.97486 1.02131 1.21687 0.94648 0.98065 0.95481 1.21152 1.00635 0.91591 1.02924 1.20416 0.91993 0.97385 0.93345 1.18172 0.94012 0.89323 0.97045 1.21191 1.35454 1.07150 0.91986 0.92326 1.25954 0.94815 0.96631 1.01911 1.70101 1.37522 1.16117 1.33466 0.85463 0.78754 0.77630 0.79038 1.18876 1.20731 1.19057 1.18986 0.93185 0.90862 1.11843 1.21125 0.73552 0.84573 0.80786 1.90804 1.53936 1.65300 1.34561 1.84686 1.70682 1.41349 1.34277 0.89233 0.93556 0.87629 0.81193 0.81739 0.85421 0.99269 0.97014 0.92556 0.71915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 9.62 71.24 0.68 -2.13 15 2 C -0.06 -1.75 5.91 -19.60 -0.12 -1.87 15 3 C -0.13 -3.38 9.69 22.23 0.22 -3.16 15 4 C -0.08 -2.20 10.04 22.33 0.22 -1.98 15 5 C -0.15 -5.38 9.67 22.23 0.21 -5.16 15 6 C -0.03 -1.43 5.10 -19.60 -0.10 -1.53 15 7 C 0.05 2.87 4.62 29.10 0.13 3.00 15 8 C -0.52 -30.02 9.09 25.60 0.23 -29.79 15 9 H 0.06 3.33 7.74 -2.91 -0.02 3.30 15 10 C 0.01 0.29 5.46 84.66 0.46 0.75 15 11 N -0.93 -57.35 13.29 21.45 0.28 -57.07 15 12 Si 0.97 44.51 29.54 68.60 2.03 46.53 15 13 H -0.26 -11.59 7.11 99.48 0.71 -10.89 15 14 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 16 C -0.15 -6.22 5.75 -20.10 -0.12 -6.33 15 17 C 0.55 24.50 4.81 70.33 0.34 24.84 15 18 O -0.55 -26.94 17.89 19.93 0.36 -26.58 15 19 O -0.50 -19.42 13.44 -56.13 -0.75 -20.17 15 20 H 0.09 1.90 8.14 -2.39 -0.02 1.88 15 21 H 0.05 1.28 7.09 -2.39 -0.02 1.27 15 22 H 0.11 1.80 8.09 -2.39 -0.02 1.78 15 23 H 0.17 2.69 8.06 -2.91 -0.02 2.67 15 24 H 0.17 3.00 8.06 -2.91 -0.02 2.97 15 25 H 0.13 4.55 8.06 -2.91 -0.02 4.53 15 26 H -0.01 -0.68 7.29 -2.38 -0.02 -0.70 15 27 H 0.01 0.68 8.05 -2.39 -0.02 0.66 15 28 H 0.27 15.34 8.31 -92.70 -0.77 14.57 15 29 H 0.42 12.14 9.11 -74.06 -0.67 11.47 15 Total: -1.00 -74.69 263.23 4.58 -70.11 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.49 Total: 10.53 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 2.18 Total: -23.35 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.28 Total: -57.07 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -0.40 Total: -46.75 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -74.69 4.58 -70.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307629269.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.262 kcal (2) G-P(sol) polarization free energy of solvation -74.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds