Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86801 * 119.99884 * 2 1 4 4 H 1.48494 * 109.47129 * 85.18429 * 3 2 1 5 5 H 1.48503 * 109.47100 * 205.18783 * 3 2 1 6 6 H 1.48502 * 109.47088 * 325.18467 * 3 2 1 7 7 C 1.39936 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99971 * 197.29150 * 7 2 1 9 9 C 1.41149 * 119.99732 * 17.29029 * 7 2 1 10 10 C 1.40731 * 120.29166 * 25.12329 * 9 7 2 11 11 C 1.36487 * 119.92916 * 179.76468 * 10 9 7 12 12 C 1.38826 * 120.53820 * 0.51486 * 11 10 9 13 13 C 1.50695 * 119.70254 * 179.76300 * 12 11 10 14 14 C 1.53007 * 109.46912 * 269.97665 * 13 12 11 15 15 C 1.50705 * 109.46938 * 180.02562 * 14 13 12 16 16 O 1.20767 * 119.99702 * 125.00109 * 15 14 13 17 17 C 1.38303 * 120.58795 * 359.73933 * 12 11 10 18 18 C 1.38444 * 120.05524 * 0.02562 * 17 12 11 19 19 O 1.35642 * 120.26471 * 180.02562 * 18 17 12 20 20 H 0.97000 * 119.99612 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.03318 * 0.02562 * 10 9 7 22 22 H 1.08000 * 119.73417 * 180.26063 * 11 10 9 23 23 H 1.08997 * 109.47279 * 29.97643 * 13 12 11 24 24 H 1.08998 * 109.47003 * 149.98086 * 13 12 11 25 25 H 1.08997 * 109.47131 * 300.00069 * 14 13 12 26 26 H 1.08998 * 109.46943 * 60.00384 * 14 13 12 27 27 H 1.07994 * 120.00370 * 305.00338 * 15 14 13 28 28 H 1.08001 * 119.96798 * 180.02562 * 17 12 11 29 29 H 0.96703 * 113.99985 * 269.97576 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3884 2.1052 1.3951 5 1 3.5874 1.4130 -0.5959 6 1 1.4947 2.6212 -0.7994 7 6 2.0084 -1.2119 -0.0005 8 1 3.0518 -1.2331 0.2774 9 6 1.3505 -2.4065 -0.3644 10 6 0.2212 -2.3677 -1.2032 11 6 -0.4064 -3.5278 -1.5542 12 6 0.0535 -4.7495 -1.0818 13 6 -0.6571 -6.0183 -1.4771 14 6 -1.7563 -6.3258 -0.4582 15 6 -2.4665 -7.5950 -0.8531 16 8 -2.5507 -8.5090 -0.0683 17 6 1.1581 -4.8125 -0.2521 18 6 1.8163 -3.6513 0.1156 19 8 2.9005 -3.7083 0.9287 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1459 -1.4215 -1.5721 22 1 -1.2703 -3.4947 -2.2015 23 1 -1.1015 -5.8934 -2.4645 24 1 0.0565 -6.8418 -1.5013 25 1 -1.3119 -6.4507 0.5292 26 1 -2.4699 -5.5023 -0.4340 27 1 -2.9000 -7.6872 -1.8379 28 1 1.5076 -5.7684 0.1093 29 1 2.6892 -3.6500 1.8706 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396022770.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = -78.164351 kcal Electronic energy + Delta-G solvation = -14069.454017 eV Core-core repulsion = 11536.022602 eV Total energy + Delta-G solvation = -2533.431415 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.00101 -38.22314 -35.62938 -34.33405 -32.49069 -29.39721 -28.53275 -26.09265 -23.34435 -21.16617 -20.90540 -20.01300 -17.44320 -16.54909 -16.14493 -15.40256 -14.97467 -14.57958 -14.26315 -13.97058 -13.67437 -12.85894 -12.58224 -12.41543 -11.93190 -11.58431 -11.34869 -11.13120 -10.93858 -10.68310 -10.37045 -10.24540 -9.77526 -9.55369 -9.20002 -8.97765 -7.46373 -7.32638 -6.85771 -4.41449 2.07360 2.63366 2.85402 3.02299 3.06090 3.13400 3.86539 4.42068 4.51795 5.19918 5.32956 5.49152 5.66201 5.82866 5.95045 6.12506 6.19627 6.33068 6.48512 6.51505 6.97966 7.10381 7.25765 7.42374 7.48087 7.66844 7.86758 7.99087 8.16783 8.42479 8.70701 8.76147 9.15838 10.06351 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.047668 B = 0.006497 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.256199 B = 4308.943339 C = 4663.822568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.259 1.259 6 H -0.275 1.275 7 C -0.448 4.448 8 H 0.084 0.916 9 C 0.094 3.906 10 C -0.154 4.154 11 C -0.100 4.100 12 C -0.207 4.207 13 C -0.044 4.044 14 C -0.185 4.185 15 C 0.346 3.654 16 O -0.477 6.477 17 C -0.102 4.102 18 C -0.028 4.028 19 O -0.497 6.497 20 H 0.282 0.718 21 H 0.120 0.880 22 H 0.090 0.910 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.014 -3.598 -2.250 5.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.183 1.183 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.102 0.898 9 C 0.091 3.909 10 C -0.174 4.174 11 C -0.118 4.118 12 C -0.208 4.208 13 C -0.082 4.082 14 C -0.223 4.223 15 C 0.204 3.796 16 O -0.349 6.349 17 C -0.120 4.120 18 C -0.073 4.073 19 O -0.303 6.303 20 H 0.093 0.907 21 H 0.138 0.862 22 H 0.108 0.892 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.947 -3.974 -2.353 5.478 hybrid contribution 0.031 1.029 0.495 1.143 sum -2.916 -2.944 -1.858 4.542 Atomic orbital electron populations 1.69837 1.07636 1.29440 1.34626 1.25989 0.94758 1.01558 0.92142 0.86263 0.80837 0.80340 0.79137 1.19499 1.18296 1.19975 1.19566 0.98294 0.90797 1.38993 0.89778 1.17922 0.91253 0.91742 0.90012 1.20968 0.99043 0.97130 1.00212 1.20301 0.98864 0.92570 1.00074 1.18765 1.00386 0.93207 1.08468 1.20034 0.95206 0.96287 0.96682 1.22578 0.99931 0.97477 1.02278 1.26242 0.74981 0.87081 0.91331 1.90372 1.49167 1.40865 1.54512 1.20659 0.95396 0.96295 0.99684 1.18473 0.94255 0.92535 1.02083 1.84734 1.31007 1.95877 1.18722 0.90735 0.86202 0.89212 0.91938 0.92562 0.89879 0.88451 0.89464 0.88934 0.79203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.65 10.97 55.55 0.61 -19.04 15 2 C 0.07 1.80 5.15 -17.33 -0.09 1.71 15 3 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 15 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 5 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 7 C -0.45 -11.74 8.71 -37.84 -0.33 -12.07 15 8 H 0.08 2.20 7.66 -52.49 -0.40 1.80 15 9 C 0.09 2.46 5.58 -106.68 -0.60 1.86 15 10 C -0.15 -3.83 8.64 -39.27 -0.34 -4.17 15 11 C -0.10 -2.16 9.61 -40.00 -0.38 -2.54 15 12 C -0.21 -4.20 5.15 -104.38 -0.54 -4.74 15 13 C -0.04 -0.68 5.31 -27.88 -0.15 -0.83 15 14 C -0.18 -2.58 5.77 -27.88 -0.16 -2.74 15 15 C 0.35 4.30 11.19 36.01 0.40 4.70 15 16 O -0.48 -7.80 17.90 5.99 0.11 -7.69 15 17 C -0.10 -2.24 9.62 -39.48 -0.38 -2.62 15 18 C -0.03 -0.69 6.74 -38.34 -0.26 -0.95 15 19 O -0.50 -11.40 12.80 -18.62 -0.24 -11.63 15 20 H 0.28 6.35 8.30 -40.82 -0.34 6.01 15 21 H 0.12 3.06 6.18 -52.49 -0.32 2.74 15 22 H 0.09 1.70 8.06 -52.49 -0.42 1.27 15 23 H 0.06 0.83 8.08 -51.93 -0.42 0.41 15 24 H 0.06 0.84 8.08 -51.93 -0.42 0.42 15 25 H 0.08 1.30 8.12 -51.93 -0.42 0.88 15 26 H 0.10 1.31 8.14 -51.93 -0.42 0.89 15 27 H 0.09 0.76 8.06 -52.49 -0.42 0.34 15 28 H 0.09 1.88 8.06 -52.49 -0.42 1.45 15 29 H 0.36 6.71 9.06 45.56 0.41 7.12 15 LS Contribution 261.86 15.07 3.95 3.95 Total: -1.00 -29.13 261.86 -5.83 -34.96 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -2.40 Total: 8.58 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -2.82 Total: -22.39 kcal Atomic # 7 Polarization: -19.65 SS G_CDS: 0.61 Total: -19.04 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.13 Total: -19.33 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.13 -5.83 -34.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396022770.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.205 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds