Wall clock time and date at job start Mon Mar 30 2020 03:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86801 * 119.99704 * 2 1 4 4 H 1.48501 * 109.47080 * 275.42004 * 3 2 1 5 5 H 1.48501 * 109.47314 * 35.41805 * 3 2 1 6 6 H 1.48503 * 109.47087 * 155.41835 * 3 2 1 7 7 C 1.39886 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00412 * 341.72187 * 7 2 1 9 9 C 1.41223 * 119.99879 * 161.72076 * 7 2 1 10 10 C 1.40855 * 120.17750 * 330.14295 * 9 7 2 11 11 C 1.36425 * 119.80988 * 179.72046 * 10 9 7 12 12 C 1.39330 * 120.18153 * 0.57836 * 11 10 9 13 13 O 1.35676 * 119.82001 * 179.71578 * 12 11 10 14 14 C 1.39295 * 120.36791 * 359.44238 * 12 11 10 15 15 C 1.50694 * 119.91056 * 180.27720 * 14 12 11 16 16 C 1.53003 * 109.47300 * 279.99840 * 15 14 12 17 17 C 1.50700 * 109.47246 * 179.97438 * 16 15 14 18 18 O 1.20754 * 119.99616 * 124.99803 * 17 16 15 19 19 C 1.36457 * 120.18165 * 0.25006 * 14 12 11 20 20 H 0.96999 * 120.00638 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.09677 * 0.03912 * 10 9 7 22 22 H 1.07997 * 119.91037 * 180.29263 * 11 10 9 23 23 H 0.96702 * 114.00281 * 269.72868 * 13 12 11 24 24 H 1.09005 * 109.47380 * 39.99698 * 15 14 12 25 25 H 1.08996 * 109.47574 * 159.99525 * 15 14 12 26 26 H 1.08996 * 109.46999 * 300.00121 * 16 15 14 27 27 H 1.09007 * 109.46741 * 59.99729 * 16 15 14 28 28 H 1.07997 * 120.00019 * 304.99970 * 17 16 15 29 29 H 1.08007 * 120.09262 * 180.02562 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3756 2.1126 -1.3938 5 1 1.5021 2.6170 0.8114 6 1 3.5929 1.4099 0.5824 7 6 2.0082 -1.2114 -0.0005 8 1 1.5093 -2.1232 0.2923 9 6 3.3670 -1.2421 -0.3842 10 6 3.8605 -0.3094 -1.3173 11 6 5.1757 -0.3422 -1.6782 12 6 6.0273 -1.3023 -1.1357 13 8 7.3327 -1.3318 -1.5042 14 6 5.5472 -2.2285 -0.2126 15 6 6.4787 -3.2585 0.3724 16 6 6.6635 -4.4041 -0.6249 17 6 7.5955 -5.4338 -0.0400 18 8 7.2459 -6.5866 0.0431 19 6 4.2357 -2.2054 0.1637 20 1 -0.4851 0.8400 0.0004 21 1 3.2008 0.4327 -1.7419 22 1 5.5569 0.3751 -2.3900 23 1 7.5126 -1.8942 -2.2700 24 1 7.4448 -2.7984 0.5802 25 1 6.0550 -3.6475 1.2982 26 1 5.6975 -4.8642 -0.8326 27 1 7.0873 -4.0149 -1.5507 28 1 8.5761 -5.1406 0.3047 29 1 3.8651 -2.9239 0.8798 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396024797.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:45 Heat of formation + Delta-G solvation = -75.627687 kcal Electronic energy + Delta-G solvation = -14222.743470 eV Core-core repulsion = 11689.422053 eV Total energy + Delta-G solvation = -2533.321417 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.22113 -38.59442 -35.93536 -34.10013 -33.09026 -29.74929 -29.46646 -25.03809 -24.33611 -21.22607 -20.98396 -20.37523 -17.67692 -17.08868 -16.23495 -15.54854 -15.01997 -14.84921 -14.50035 -14.27935 -13.50517 -13.00392 -12.87425 -12.49638 -12.24814 -12.12476 -11.62836 -11.20188 -10.94832 -10.80081 -10.34402 -10.13900 -10.08281 -9.63885 -9.38129 -9.10124 -7.84929 -7.47516 -7.05250 -4.56055 1.98468 2.37282 2.53570 3.04416 3.15640 3.26231 3.90801 4.26654 4.39086 5.07089 5.12716 5.24435 5.39588 5.54883 5.74244 5.86640 5.97402 6.13364 6.36939 6.42393 6.69204 6.77693 7.00042 7.21915 7.35496 7.40595 7.60894 7.73406 7.87957 8.21817 8.38926 8.65138 8.73427 9.96566 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.039976 B = 0.007689 C = 0.006720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.255006 B = 3640.799434 C = 4165.903086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.083 3.917 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.441 4.441 8 H 0.092 0.908 9 C 0.090 3.910 10 C -0.230 4.230 11 C -0.090 4.090 12 C -0.042 4.042 13 O -0.498 6.498 14 C -0.066 4.066 15 C -0.063 4.063 16 C -0.181 4.181 17 C 0.348 3.652 18 O -0.472 6.472 19 C -0.194 4.194 20 H 0.287 0.713 21 H 0.103 0.897 22 H 0.099 0.901 23 H 0.352 0.648 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.081 -1.798 -1.446 10.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.469 4.469 8 H 0.110 0.890 9 C 0.087 3.913 10 C -0.249 4.249 11 C -0.109 4.109 12 C -0.087 4.087 13 O -0.304 6.304 14 C -0.067 4.067 15 C -0.101 4.101 16 C -0.219 4.219 17 C 0.205 3.795 18 O -0.344 6.344 19 C -0.213 4.213 20 H 0.097 0.903 21 H 0.121 0.879 22 H 0.117 0.883 23 H 0.204 0.796 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.655 -1.946 -0.885 9.889 hybrid contribution 0.040 0.690 -0.547 0.881 sum 9.695 -1.256 -1.432 9.880 Atomic orbital electron populations 1.69715 1.08128 1.30474 1.34336 1.26196 0.94736 1.01873 0.90816 0.86297 0.81359 0.79611 0.78916 1.19584 1.21687 1.16653 1.19496 0.93234 0.96196 1.38002 0.88994 1.17753 0.93088 0.90954 0.89546 1.20730 0.95133 1.04919 1.04142 1.20640 0.93477 0.97816 0.98941 1.17735 0.83570 1.01817 1.05531 1.84840 1.23881 1.70748 1.50950 1.19322 0.94184 0.95225 0.97980 1.20228 0.99721 0.93167 0.96967 1.22426 1.01331 0.97245 1.00894 1.26151 0.92097 0.88273 0.72990 1.90385 1.77668 1.22689 1.43664 1.20584 0.91907 1.04145 1.04705 0.90278 0.87927 0.88294 0.79615 0.90608 0.91567 0.89531 0.88760 0.89190 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.92 13.93 55.54 0.77 -20.15 15 2 C 0.08 2.14 5.40 -17.34 -0.09 2.04 15 3 Si 0.91 20.43 24.51 -169.99 -4.17 16.26 15 4 H -0.27 -5.86 6.70 56.52 0.38 -5.48 15 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 15 6 H -0.24 -5.64 6.87 56.52 0.39 -5.25 15 7 C -0.44 -11.61 9.56 -37.83 -0.36 -11.97 15 8 H 0.09 2.53 8.06 -52.49 -0.42 2.10 15 9 C 0.09 2.20 5.10 -106.80 -0.55 1.66 15 10 C -0.23 -5.40 7.12 -39.25 -0.28 -5.68 15 11 C -0.09 -1.92 9.92 -39.83 -0.40 -2.32 15 12 C -0.04 -0.84 6.70 -38.78 -0.26 -1.10 15 13 O -0.50 -8.40 12.62 -18.73 -0.24 -8.63 15 14 C -0.07 -1.30 5.11 -104.87 -0.54 -1.84 15 15 C -0.06 -0.95 4.98 -27.88 -0.14 -1.09 15 16 C -0.18 -2.32 5.77 -27.88 -0.16 -2.48 15 17 C 0.35 4.06 11.19 36.01 0.40 4.46 15 18 O -0.47 -7.43 17.90 6.00 0.11 -7.32 15 19 C -0.19 -4.31 9.35 -39.25 -0.37 -4.68 15 20 H 0.29 6.75 8.30 -40.82 -0.34 6.41 15 21 H 0.10 2.41 4.73 -52.49 -0.25 2.16 15 22 H 0.10 1.90 8.06 -52.49 -0.42 1.47 15 23 H 0.35 4.36 8.62 45.56 0.39 4.75 15 24 H 0.08 1.05 7.85 -51.93 -0.41 0.64 15 25 H 0.07 0.97 7.98 -51.93 -0.41 0.55 15 26 H 0.09 1.27 8.12 -51.93 -0.42 0.84 15 27 H 0.09 1.07 7.61 -51.93 -0.40 0.67 15 28 H 0.09 0.73 8.06 -52.49 -0.42 0.31 15 29 H 0.10 2.21 8.02 -52.48 -0.42 1.79 15 LS Contribution 255.23 15.07 3.85 3.85 Total: -1.00 -29.10 255.23 -4.76 -33.86 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -2.35 Total: 5.12 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.73 Total: -22.99 kcal Atomic # 7 Polarization: -20.92 SS G_CDS: 0.77 Total: -20.15 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.13 Total: -15.96 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.17 Total: 16.26 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.10 -4.76 -33.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396024797.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.765 kcal (2) G-P(sol) polarization free energy of solvation -29.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds