Wall clock time and date at job start Mon Mar 30 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48498 * 109.47287 * 239.99754 * 3 2 1 5 5 H 1.48501 * 109.46863 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47302 * 119.99449 * 3 2 1 7 7 C 1.37878 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00296 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99596 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47086 * 180.02562 * 9 7 2 11 11 C 1.38437 * 119.90959 * 270.27736 * 10 9 7 12 12 C 1.38380 * 120.34481 * 180.23898 * 11 10 9 13 13 C 1.37914 * 120.17182 * 359.47977 * 12 11 10 14 14 C 1.50708 * 120.08447 * 180.28020 * 13 12 11 15 15 O 1.42895 * 109.47258 * 0.02562 * 14 13 12 16 16 C 1.39828 * 119.82356 * 0.26395 * 13 12 11 17 17 C 1.47169 * 120.17080 * 180.02562 * 16 13 12 18 18 O 1.21259 * 119.99905 * 359.97438 * 17 16 13 19 19 C 1.37865 * 119.91716 * 89.99902 * 10 9 7 20 20 H 0.97002 * 120.00244 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47114 * 59.99772 * 9 7 2 22 22 H 1.09000 * 109.47128 * 299.99878 * 9 7 2 23 23 H 1.07991 * 119.82663 * 359.97438 * 11 10 9 24 24 H 1.08002 * 119.91533 * 179.76681 * 12 11 10 25 25 H 1.09000 * 109.46827 * 120.00415 * 14 13 12 26 26 H 1.09005 * 109.46668 * 239.99995 * 14 13 12 27 27 H 0.96701 * 113.99964 * 179.97438 * 15 14 13 28 28 H 1.07999 * 120.00498 * 179.97438 * 17 16 13 29 29 H 1.08000 * 120.08355 * 0.04307 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0018 11 6 2.6843 -4.1660 -1.1976 12 6 3.5797 -5.2209 -1.2070 13 6 4.0352 -5.7541 -0.0194 14 6 5.0153 -6.8989 -0.0319 15 8 5.3189 -7.2513 -1.3830 16 6 3.5855 -5.2295 1.1962 17 6 4.0669 -5.7922 2.4680 18 8 4.8553 -6.7135 2.4635 19 6 2.6763 -4.1666 1.1973 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.3344 -3.7501 -2.1308 24 1 3.9264 -5.6248 -2.1467 25 1 5.9301 -6.5995 0.4795 26 1 4.5779 -7.7571 0.4784 27 1 5.9458 -7.9828 -1.4673 28 1 3.7181 -5.3846 3.4053 29 1 2.3241 -3.7562 2.1322 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396048249.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:26 Heat of formation + Delta-G solvation = -71.935437 kcal Electronic energy + Delta-G solvation = -14074.215946 eV Core-core repulsion = 11541.054636 eV Total energy + Delta-G solvation = -2533.161309 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.78053 -37.89148 -36.56282 -33.53518 -31.65693 -30.90592 -28.19610 -25.52360 -23.96629 -22.58399 -21.53868 -19.45818 -17.18267 -16.47780 -16.25679 -15.53433 -15.12744 -15.02055 -14.51827 -13.94421 -13.73185 -13.33538 -13.09068 -12.55766 -11.97778 -11.59140 -11.35075 -11.14633 -11.00615 -10.65806 -10.51066 -10.15530 -9.72257 -9.51040 -9.34440 -8.49899 -8.46569 -7.86434 -6.10666 -4.15321 1.02396 1.94117 2.77708 3.28402 3.32934 3.36045 4.25155 4.27703 4.43649 4.48443 5.18604 5.23946 5.33865 5.53904 5.62090 5.68984 5.79822 5.96836 6.07405 6.37959 6.54082 6.80192 6.92575 7.02044 7.38357 7.52538 7.56270 7.69353 7.71299 7.84576 8.23164 8.89682 9.49245 10.99032 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.039094 B = 0.006606 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.048379 B = 4237.543892 C = 4469.295867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.051 4.051 11 C -0.086 4.086 12 C -0.117 4.117 13 C -0.062 4.062 14 C 0.127 3.873 15 O -0.577 6.577 16 C -0.199 4.199 17 C 0.385 3.615 18 O -0.479 6.479 19 C -0.069 4.069 20 H 0.263 0.737 21 H 0.031 0.969 22 H 0.031 0.969 23 H 0.124 0.876 24 H 0.128 0.872 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.378 0.622 28 H 0.102 0.898 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.664 -10.661 1.414 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.051 4.051 11 C -0.104 4.104 12 C -0.135 4.135 13 C -0.062 4.062 14 C 0.050 3.950 15 O -0.382 6.382 16 C -0.200 4.200 17 C 0.247 3.753 18 O -0.355 6.355 19 C -0.088 4.088 20 H 0.073 0.927 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.142 0.858 24 H 0.146 0.854 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.224 0.776 28 H 0.118 0.882 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.498 -10.533 1.303 12.445 hybrid contribution 0.700 0.735 0.092 1.019 sum 7.198 -9.798 1.395 12.238 Atomic orbital electron populations 1.69937 1.06048 1.27071 1.50104 1.25002 0.94880 0.99285 0.95016 0.86587 0.79538 0.82727 0.78788 1.20137 1.21199 1.20121 1.21014 0.93024 0.89836 1.51569 0.92479 1.18371 0.92448 0.89382 0.98655 1.20722 0.96902 0.95700 0.91751 1.21452 0.95664 0.94600 0.98722 1.20908 0.97899 0.96818 0.97872 1.19762 0.97121 0.96420 0.92914 1.20978 0.96770 0.95227 0.82021 1.86426 1.67648 1.56758 1.27380 1.20539 1.03689 1.01371 0.94367 1.24078 0.77690 0.80621 0.92926 1.90438 1.28525 1.25651 1.90849 1.21272 0.94890 0.93550 0.99064 0.92685 0.95110 0.95094 0.85771 0.85374 0.91920 0.91950 0.77573 0.88152 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.94 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.52 -13.96 9.09 -34.44 -0.31 -14.28 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 9 C 0.05 1.18 5.10 -29.03 -0.15 1.04 15 10 C -0.05 -1.05 5.06 -104.69 -0.53 -1.58 15 11 C -0.09 -1.65 9.69 -39.46 -0.38 -2.03 15 12 C -0.12 -2.06 9.37 -39.65 -0.37 -2.43 15 13 C -0.06 -1.05 5.92 -104.14 -0.62 -1.67 15 14 C 0.13 1.85 5.69 36.01 0.20 2.05 15 15 O -0.58 -7.66 12.14 -35.23 -0.43 -8.08 15 16 C -0.20 -3.27 5.87 -105.07 -0.62 -3.88 15 17 C 0.39 5.33 11.44 34.36 0.39 5.72 15 18 O -0.48 -7.47 14.24 5.58 0.08 -7.39 15 19 C -0.07 -1.25 9.44 -39.11 -0.37 -1.62 15 20 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 21 H 0.03 0.79 8.09 -51.93 -0.42 0.37 15 22 H 0.03 0.78 8.08 -51.93 -0.42 0.37 15 23 H 0.12 2.28 8.06 -52.49 -0.42 1.86 15 24 H 0.13 2.12 7.00 -52.49 -0.37 1.75 15 25 H 0.06 0.91 7.35 -51.93 -0.38 0.53 15 26 H 0.06 0.89 7.35 -51.93 -0.38 0.51 15 27 H 0.38 3.04 9.12 45.56 0.42 3.45 15 28 H 0.10 1.04 8.06 -52.49 -0.42 0.61 15 29 H 0.13 2.12 8.06 -52.49 -0.42 1.69 15 LS Contribution 259.86 15.07 3.92 3.92 Total: -1.00 -30.80 259.86 -5.93 -36.72 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -2.36 Total: 0.87 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.85 Total: -17.13 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.74 Total: -24.94 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.35 Total: -15.47 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.80 -5.93 -36.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396048249.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.211 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds