Wall clock time and date at job start Mon Mar 30 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48498 * 109.47287 * 239.99754 * 3 2 1 5 5 H 1.48501 * 109.46863 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47302 * 119.99449 * 3 2 1 7 7 C 1.37878 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00296 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99596 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47086 * 180.02562 * 9 7 2 11 11 C 1.38437 * 119.90959 * 270.27736 * 10 9 7 12 12 C 1.38380 * 120.34481 * 180.23898 * 11 10 9 13 13 C 1.37914 * 120.17182 * 359.47977 * 12 11 10 14 14 C 1.50708 * 120.08447 * 180.28020 * 13 12 11 15 15 O 1.42895 * 109.47258 * 0.02562 * 14 13 12 16 16 C 1.39828 * 119.82356 * 0.26395 * 13 12 11 17 17 C 1.47169 * 120.17080 * 180.02562 * 16 13 12 18 18 O 1.21259 * 119.99905 * 359.97438 * 17 16 13 19 19 C 1.37865 * 119.91716 * 89.99902 * 10 9 7 20 20 H 0.97002 * 120.00244 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47114 * 59.99772 * 9 7 2 22 22 H 1.09000 * 109.47128 * 299.99878 * 9 7 2 23 23 H 1.07991 * 119.82663 * 359.97438 * 11 10 9 24 24 H 1.08002 * 119.91533 * 179.76681 * 12 11 10 25 25 H 1.09000 * 109.46827 * 120.00415 * 14 13 12 26 26 H 1.09005 * 109.46668 * 239.99995 * 14 13 12 27 27 H 0.96701 * 113.99964 * 179.97438 * 15 14 13 28 28 H 1.07999 * 120.00498 * 179.97438 * 17 16 13 29 29 H 1.08000 * 120.08355 * 0.04307 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0018 11 6 2.6843 -4.1660 -1.1976 12 6 3.5797 -5.2209 -1.2070 13 6 4.0352 -5.7541 -0.0194 14 6 5.0153 -6.8989 -0.0319 15 8 5.3189 -7.2513 -1.3830 16 6 3.5855 -5.2295 1.1962 17 6 4.0669 -5.7922 2.4680 18 8 4.8553 -6.7135 2.4635 19 6 2.6763 -4.1666 1.1973 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.3344 -3.7501 -2.1308 24 1 3.9264 -5.6248 -2.1467 25 1 5.9301 -6.5995 0.4795 26 1 4.5779 -7.7571 0.4784 27 1 5.9458 -7.9828 -1.4673 28 1 3.7181 -5.3846 3.4053 29 1 2.3241 -3.7562 2.1322 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396048249.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:26 Heat of formation + Delta-G solvation = -92.443872 kcal Electronic energy + Delta-G solvation = -14075.105258 eV Core-core repulsion = 11541.054636 eV Total energy + Delta-G solvation = -2534.050622 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.05890 -39.17175 -37.68914 -35.41256 -33.33653 -32.27233 -29.85783 -27.07105 -25.34650 -24.31185 -22.82881 -20.87177 -18.50299 -18.29349 -17.59225 -16.83390 -16.57657 -16.25446 -16.16100 -15.29470 -14.86750 -14.70151 -14.56078 -14.43517 -13.54839 -13.27234 -13.04460 -12.67895 -12.55539 -12.38437 -12.22734 -11.60915 -11.47134 -11.12838 -10.61980 -10.53840 -9.86605 -9.37179 -8.19496 -6.32410 -0.26659 0.50122 1.41963 1.43641 1.51575 1.56224 2.40755 2.89912 3.12065 3.24810 3.40016 3.89239 4.07989 4.20818 4.40896 4.46489 4.56803 4.65063 4.68754 4.94071 5.09761 5.28631 5.36381 5.42032 5.53638 5.74795 5.95550 6.00556 6.19524 6.45455 6.80059 6.90467 7.36458 8.89498 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.039094 B = 0.006606 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.048379 B = 4237.543892 C = 4469.295867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.057 3.943 10 C -0.079 4.079 11 C -0.098 4.098 12 C -0.117 4.117 13 C -0.070 4.070 14 C 0.135 3.865 15 O -0.588 6.588 16 C -0.196 4.196 17 C 0.395 3.605 18 O -0.492 6.492 19 C -0.068 4.068 20 H 0.266 0.734 21 H 0.004 0.996 22 H 0.014 0.986 23 H 0.120 0.880 24 H 0.138 0.862 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.401 0.599 28 H 0.150 0.850 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.352 -11.264 2.343 14.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.021 3.979 10 C -0.079 4.079 11 C -0.116 4.116 12 C -0.135 4.135 13 C -0.070 4.070 14 C 0.059 3.941 15 O -0.398 6.398 16 C -0.197 4.197 17 C 0.257 3.743 18 O -0.368 6.368 19 C -0.086 4.086 20 H 0.074 0.926 21 H 0.023 0.977 22 H 0.032 0.968 23 H 0.138 0.862 24 H 0.156 0.844 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.251 0.749 28 H 0.166 0.834 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.209 -11.165 2.228 14.036 hybrid contribution 0.207 0.809 -0.215 0.863 sum 8.417 -10.355 2.013 13.495 Atomic orbital electron populations 1.70056 1.07583 1.28021 1.51131 1.25859 0.95694 1.02905 0.94586 0.85547 0.78321 0.78365 0.79118 1.19643 1.20731 1.19083 1.21346 0.93086 0.91208 1.51172 0.92724 1.18109 0.92747 0.90628 0.96464 1.20438 0.97906 0.95926 0.93652 1.21442 0.96496 0.95477 0.98161 1.20986 0.97422 0.96232 0.98881 1.20256 0.97042 0.96832 0.92907 1.20854 0.96142 0.94385 0.82755 1.86372 1.68665 1.58157 1.26561 1.20887 1.02574 1.00397 0.95888 1.24499 0.76870 0.79929 0.93035 1.90445 1.29134 1.26305 1.90885 1.21371 0.94864 0.93783 0.98592 0.92550 0.97743 0.96809 0.86195 0.84374 0.91555 0.91277 0.74852 0.83402 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.41 13.29 21.45 0.28 -54.12 15 2 C 0.01 0.45 5.46 84.66 0.46 0.91 15 3 Si 0.96 43.17 29.54 68.60 2.03 45.19 15 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 7 C -0.53 -29.19 9.09 25.60 0.23 -28.95 15 8 H 0.05 2.96 7.74 -2.92 -0.02 2.94 15 9 C 0.06 2.93 5.10 29.10 0.15 3.08 15 10 C -0.08 -3.33 5.06 -19.91 -0.10 -3.43 15 11 C -0.10 -3.79 9.69 22.35 0.22 -3.58 15 12 C -0.12 -4.04 9.37 22.23 0.21 -3.83 15 13 C -0.07 -2.25 5.92 -19.55 -0.12 -2.37 15 14 C 0.14 3.60 5.69 71.24 0.41 4.00 15 15 O -0.59 -14.11 12.14 -148.98 -1.81 -15.92 15 16 C -0.20 -6.03 5.87 -20.15 -0.12 -6.15 15 17 C 0.39 9.52 11.44 70.17 0.80 10.32 15 18 O -0.49 -13.65 14.24 -2.96 -0.04 -13.70 15 19 C -0.07 -2.38 9.44 22.58 0.21 -2.17 15 20 H 0.27 14.68 8.31 -92.71 -0.77 13.91 15 21 H 0.00 0.23 8.09 -2.38 -0.02 0.21 15 22 H 0.01 0.72 8.08 -2.39 -0.02 0.71 15 23 H 0.12 4.60 8.06 -2.92 -0.02 4.57 15 24 H 0.14 4.41 7.00 -2.91 -0.02 4.39 15 25 H 0.07 1.74 7.35 -2.39 -0.02 1.72 15 26 H 0.07 1.77 7.35 -2.38 -0.02 1.75 15 27 H 0.40 5.28 9.12 -74.06 -0.68 4.61 15 28 H 0.15 2.32 8.06 -2.91 -0.02 2.29 15 29 H 0.15 4.51 8.06 -2.91 -0.02 4.49 15 Total: -1.00 -65.99 259.86 3.30 -62.69 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.49 Total: 8.02 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 2.35 Total: -32.17 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.28 Total: -54.12 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -1.85 Total: -29.61 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -65.99 3.30 -62.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396048249.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.757 kcal (2) G-P(sol) polarization free energy of solvation -65.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds