Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48496 * 109.47177 * 270.00707 * 3 2 1 5 5 H 1.48500 * 109.46681 * 30.00234 * 3 2 1 6 6 H 1.48497 * 109.46980 * 149.99812 * 3 2 1 7 7 C 1.37876 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00423 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47483 * 180.02562 * 9 7 2 11 11 C 1.37908 * 120.08753 * 100.92581 * 10 9 7 12 12 C 1.38381 * 120.17322 * 180.28073 * 11 10 9 13 13 C 1.38427 * 120.34453 * 359.48335 * 12 11 10 14 14 C 1.50703 * 119.91362 * 180.23913 * 13 12 11 15 15 O 1.42895 * 109.47260 * 270.27704 * 14 13 12 16 16 C 1.37864 * 120.17655 * 0.51315 * 13 12 11 17 17 C 1.39831 * 120.08808 * 280.94859 * 10 9 7 18 18 C 1.47172 * 120.16951 * 359.97438 * 17 10 9 19 19 O 1.21253 * 120.00309 * 5.30939 * 18 17 10 20 20 H 0.96995 * 119.99986 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.46941 * 60.00088 * 9 7 2 22 22 H 1.08997 * 109.46907 * 300.00526 * 9 7 2 23 23 H 1.08004 * 119.90985 * 359.97438 * 11 10 9 24 24 H 1.07997 * 119.82560 * 179.72364 * 12 11 10 25 25 H 1.08998 * 109.46947 * 30.27781 * 14 13 12 26 26 H 1.08996 * 109.47093 * 150.27683 * 14 13 12 27 27 H 0.96696 * 114.00453 * 179.97438 * 15 14 13 28 28 H 1.08000 * 120.09309 * 179.76572 * 16 13 12 29 29 H 1.08003 * 119.99806 * 185.30832 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 6 2.5076 -4.3171 1.1711 12 6 3.4109 -5.3655 1.1742 13 6 4.0348 -5.7545 0.0014 14 6 5.0129 -6.9010 0.0150 15 8 6.3268 -6.4032 0.2751 16 6 3.7682 -5.0923 -1.1780 17 6 2.8605 -4.0282 -1.1884 18 6 2.5701 -3.3159 -2.4431 19 8 1.8580 -2.3345 -2.4324 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 2.0223 -4.0216 2.0895 24 1 3.6273 -5.8853 2.0958 25 1 4.7317 -7.6092 0.7944 26 1 4.9991 -7.4017 -0.9531 27 1 7.0093 -7.0878 0.2987 28 1 4.2586 -5.3946 -2.0916 29 1 2.9913 -3.6673 -3.3735 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396049143.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = -59.562646 kcal Electronic energy + Delta-G solvation = -14326.957447 eV Core-core repulsion = 11794.332662 eV Total energy + Delta-G solvation = -2532.624785 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.42797 -37.64926 -36.35497 -33.36334 -31.56906 -30.83566 -28.18399 -25.08356 -24.13106 -22.37940 -21.24257 -19.33316 -17.44209 -16.26545 -16.20747 -15.48854 -15.01355 -14.37433 -14.26610 -13.62992 -13.43065 -13.22174 -13.05017 -12.28346 -11.78625 -11.71192 -11.26625 -11.16657 -10.79980 -10.59915 -10.44305 -10.08847 -9.58433 -9.36288 -8.57838 -8.40754 -8.18450 -7.92203 -5.89417 -3.87984 1.37146 1.86341 3.20793 3.39862 3.44881 3.48543 4.21568 4.55993 4.68804 4.89285 5.08506 5.11289 5.37778 5.42095 5.47467 5.53066 5.92608 5.99322 6.18053 6.40932 6.50142 6.86387 6.98440 7.03716 7.45755 7.59266 7.65026 7.89611 8.02895 8.38741 8.45425 9.11059 9.71274 11.22258 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.037730 B = 0.007655 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.938011 B = 3656.841482 C = 3761.623425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.483 4.483 8 H 0.050 0.950 9 C 0.042 3.958 10 C 0.026 3.974 11 C -0.144 4.144 12 C -0.073 4.073 13 C -0.143 4.143 14 C 0.126 3.874 15 O -0.568 6.568 16 C -0.055 4.055 17 C -0.195 4.195 18 C 0.348 3.652 19 O -0.395 6.395 20 H 0.259 0.741 21 H 0.056 0.944 22 H 0.021 0.979 23 H 0.124 0.876 24 H 0.115 0.885 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.374 0.626 28 H 0.120 0.880 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.340 -14.100 -1.197 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.521 4.521 8 H 0.068 0.932 9 C 0.006 3.994 10 C 0.026 3.974 11 C -0.162 4.162 12 C -0.091 4.091 13 C -0.143 4.143 14 C 0.048 3.952 15 O -0.373 6.373 16 C -0.074 4.074 17 C -0.196 4.196 18 C 0.202 3.798 19 O -0.264 6.264 20 H 0.069 0.931 21 H 0.073 0.927 22 H 0.040 0.960 23 H 0.142 0.858 24 H 0.133 0.867 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.220 0.780 28 H 0.138 0.862 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.459 -12.857 -1.173 14.911 hybrid contribution 0.934 0.218 0.052 0.960 sum 8.393 -12.639 -1.121 15.214 Atomic orbital electron populations 1.69945 1.05933 1.26380 1.51153 1.24880 0.94791 0.98827 0.95416 0.86600 0.79765 0.83612 0.78066 1.20697 1.21302 1.20021 1.20726 0.92321 0.89439 1.49631 0.93204 1.18625 0.92709 0.89244 0.98829 1.21159 0.92770 0.92842 0.90660 1.21139 0.99884 0.96604 0.98606 1.21123 0.95167 0.96117 0.96723 1.19278 1.00540 1.00351 0.94162 1.20899 0.81818 0.93314 0.99121 1.86644 1.17281 1.38299 1.95089 1.21084 0.95382 0.93609 0.97290 1.20849 1.01952 0.99594 0.97157 1.23706 0.80787 0.84273 0.91003 1.90752 1.26529 1.20746 1.88380 0.93140 0.92670 0.96044 0.85762 0.86674 0.93261 0.93205 0.78019 0.86194 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.65 13.29 55.43 0.74 -26.91 15 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 15 3 Si 0.89 22.81 29.54 -169.99 -5.02 17.79 15 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 15 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 15 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 7 C -0.48 -14.14 7.52 -34.44 -0.26 -14.40 15 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 15 9 C 0.04 1.13 4.40 -29.04 -0.13 1.00 15 10 C 0.03 0.58 5.12 -104.15 -0.53 0.05 15 11 C -0.14 -2.79 9.65 -39.65 -0.38 -3.17 15 12 C -0.07 -1.19 9.69 -39.46 -0.38 -1.57 15 13 C -0.14 -2.21 5.50 -104.69 -0.58 -2.78 15 14 C 0.13 1.44 7.16 36.01 0.26 1.70 15 15 O -0.57 -6.92 13.64 -35.23 -0.48 -7.40 15 16 C -0.06 -0.89 9.44 -39.11 -0.37 -1.25 15 17 C -0.19 -3.81 5.86 -105.06 -0.62 -4.43 15 18 C 0.35 6.73 11.39 34.36 0.39 7.12 15 19 O -0.40 -9.79 13.05 5.58 0.07 -9.71 15 20 H 0.26 7.57 8.31 -40.82 -0.34 7.24 15 21 H 0.06 1.60 6.17 -51.92 -0.32 1.28 15 22 H 0.02 0.59 7.99 -51.93 -0.42 0.18 15 23 H 0.12 2.29 8.03 -52.48 -0.42 1.87 15 24 H 0.12 1.56 8.06 -52.49 -0.42 1.13 15 25 H 0.05 0.47 8.09 -51.93 -0.42 0.05 15 26 H 0.05 0.47 8.08 -51.93 -0.42 0.05 15 27 H 0.37 2.44 9.12 45.56 0.42 2.85 15 28 H 0.12 1.52 8.06 -52.49 -0.42 1.10 15 29 H 0.08 1.14 8.06 -52.48 -0.42 0.72 15 LS Contribution 259.73 15.07 3.91 3.91 Total: -1.00 -34.98 259.73 -5.86 -40.84 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -2.39 Total: -2.52 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -2.69 Total: -16.01 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.74 Total: -26.91 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.41 Total: -17.11 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -34.98 -5.86 -40.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396049143.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.718 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds