Wall clock time and date at job start Mon Mar 30 2020 03:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99624 * 2 1 4 4 H 1.48495 * 109.46919 * 239.99840 * 3 2 1 5 5 H 1.48506 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47123 * 119.99607 * 3 2 1 7 7 C 1.37873 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00066 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.37909 * 120.08376 * 100.74581 * 10 9 7 12 12 C 1.38385 * 120.16743 * 179.72225 * 11 10 9 13 13 C 1.50698 * 119.82761 * 180.27667 * 12 11 10 14 14 O 1.42894 * 109.47411 * 270.27801 * 13 12 11 15 15 C 1.38428 * 120.34869 * 0.55215 * 12 11 10 16 16 C 1.37865 * 120.17407 * 359.73033 * 15 12 11 17 17 C 1.39832 * 120.08725 * 281.02145 * 10 9 7 18 18 C 1.47158 * 120.17259 * 0.02562 * 17 10 9 19 19 O 1.21255 * 120.00411 * 5.30447 * 18 17 10 20 20 H 0.96994 * 120.00127 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47236 * 299.99852 * 9 7 2 22 22 H 1.09001 * 109.46925 * 59.99685 * 9 7 2 23 23 H 1.07999 * 119.91818 * 359.97438 * 11 10 9 24 24 H 1.09003 * 109.46672 * 30.27915 * 13 12 11 25 25 H 1.09000 * 109.47406 * 150.27401 * 13 12 11 26 26 H 0.96701 * 114.00593 * 180.02562 * 14 13 12 27 27 H 1.08001 * 119.91426 * 179.69733 * 15 12 11 28 28 H 1.07998 * 120.08867 * 179.97438 * 16 15 12 29 29 H 1.08001 * 120.00367 * 185.30644 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2306 -3.6445 0.0005 11 6 2.5107 -4.3145 1.1729 12 6 3.4054 -5.3702 1.1738 13 6 3.7012 -6.1010 2.4582 14 8 4.7997 -5.4726 3.1217 15 6 4.0345 -5.7549 0.0023 16 6 3.7694 -5.0914 -1.1767 17 6 2.8619 -4.0270 -1.1871 18 6 2.5736 -3.3131 -2.4411 19 8 1.8621 -2.3313 -2.4301 20 1 -0.4850 0.8400 -0.0004 21 1 0.6242 -2.5567 0.8903 22 1 0.6248 -2.5570 -0.8897 23 1 2.0276 -4.0172 2.0919 24 1 2.8227 -6.0725 3.1029 25 1 3.9555 -7.1375 2.2363 26 1 5.0461 -5.8916 3.9577 27 1 4.7352 -6.5767 0.0120 28 1 4.2612 -5.3924 -2.0899 29 1 2.9957 -3.6635 -3.3714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396052483.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:16 Heat of formation + Delta-G solvation = -59.155890 kcal Electronic energy + Delta-G solvation = -14374.592356 eV Core-core repulsion = 11841.985209 eV Total energy + Delta-G solvation = -2532.607147 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.41681 -37.65866 -36.28453 -33.31653 -31.51295 -31.12972 -27.21005 -26.47827 -23.42065 -22.30792 -21.23643 -19.38314 -17.39333 -16.33386 -16.21381 -15.52894 -14.95475 -14.32893 -14.31492 -13.55232 -13.46344 -13.19006 -12.60398 -12.43057 -12.12270 -11.58616 -11.21358 -11.15659 -10.81384 -10.55932 -10.46038 -10.04497 -9.54889 -9.37263 -8.57540 -8.36947 -8.17876 -7.92704 -5.88271 -3.86771 1.27078 2.00680 3.16317 3.41975 3.44451 3.48499 4.24508 4.57572 4.70724 4.93197 5.06893 5.17773 5.36909 5.45710 5.48423 5.53164 5.91333 6.00644 6.21679 6.40499 6.58500 6.81282 7.00572 7.03416 7.47012 7.64591 7.65731 7.90365 8.03867 8.39008 8.46505 9.11938 9.72347 11.23378 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.028828 B = 0.008959 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.056340 B = 3124.689954 C = 3648.762058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.483 4.483 8 H 0.049 0.951 9 C 0.045 3.955 10 C 0.015 3.985 11 C -0.118 4.118 12 C -0.074 4.074 13 C 0.118 3.882 14 O -0.565 6.565 15 C -0.143 4.143 16 C -0.081 4.081 17 C -0.185 4.185 18 C 0.346 3.654 19 O -0.394 6.394 20 H 0.259 0.741 21 H 0.020 0.980 22 H 0.055 0.945 23 H 0.122 0.878 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.375 0.625 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.058 -13.321 1.266 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.008 3.992 10 C 0.015 3.985 11 C -0.136 4.136 12 C -0.075 4.075 13 C 0.041 3.959 14 O -0.370 6.370 15 C -0.161 4.161 16 C -0.100 4.100 17 C -0.186 4.186 18 C 0.200 3.800 19 O -0.263 6.263 20 H 0.069 0.931 21 H 0.039 0.961 22 H 0.073 0.927 23 H 0.140 0.860 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.221 0.779 27 H 0.134 0.866 28 H 0.140 0.860 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.465 -12.252 0.744 13.873 hybrid contribution 0.688 0.368 0.534 0.945 sum 7.152 -11.884 1.278 13.929 Atomic orbital electron populations 1.69934 1.05933 1.26483 1.51123 1.24876 0.94789 0.98813 0.95416 0.86660 0.79570 0.83285 0.78492 1.20339 1.21316 1.20391 1.20700 0.92295 0.89498 1.49670 0.93265 1.18592 0.92641 0.89196 0.98748 1.21094 0.93481 0.93416 0.90553 1.21020 0.99079 0.95081 0.98458 1.19739 0.97153 0.96830 0.93736 1.21012 0.89153 0.94277 0.91489 1.86636 1.51940 1.58961 1.39442 1.20687 1.01251 1.01666 0.92501 1.21199 0.96516 0.94528 0.97733 1.20918 1.01345 0.99258 0.97049 1.23736 0.80869 0.84305 0.91049 1.90754 1.26447 1.20705 1.88363 0.93096 0.96137 0.92719 0.85977 0.92819 0.93134 0.77864 0.86631 0.85996 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.29 55.43 0.74 -27.02 15 2 C 0.06 1.84 5.46 -17.82 -0.10 1.75 15 3 Si 0.89 22.90 29.54 -169.99 -5.02 17.87 15 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 15 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 15 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 7 C -0.48 -14.24 7.51 -34.44 -0.26 -14.50 15 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 15 9 C 0.04 1.20 4.40 -29.03 -0.13 1.07 15 10 C 0.01 0.33 5.12 -104.15 -0.53 -0.20 15 11 C -0.12 -2.34 9.30 -39.65 -0.37 -2.71 15 12 C -0.07 -1.24 5.52 -104.50 -0.58 -1.81 15 13 C 0.12 1.51 7.16 36.00 0.26 1.77 15 14 O -0.56 -7.62 13.64 -35.23 -0.48 -8.10 15 15 C -0.14 -2.18 9.68 -39.65 -0.38 -2.56 15 16 C -0.08 -1.27 9.80 -39.11 -0.38 -1.66 15 17 C -0.18 -3.61 5.86 -105.07 -0.62 -4.23 15 18 C 0.35 6.66 11.38 34.35 0.39 7.06 15 19 O -0.39 -9.75 13.05 5.58 0.07 -9.68 15 20 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 21 H 0.02 0.57 8.00 -51.93 -0.42 0.16 15 22 H 0.06 1.59 6.17 -51.93 -0.32 1.27 15 23 H 0.12 2.36 8.03 -52.49 -0.42 1.94 15 24 H 0.05 0.62 8.08 -51.93 -0.42 0.20 15 25 H 0.05 0.51 8.08 -51.93 -0.42 0.10 15 26 H 0.37 2.89 9.12 45.56 0.42 3.30 15 27 H 0.12 1.42 8.06 -52.49 -0.42 1.00 15 28 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 29 H 0.08 1.14 8.06 -52.49 -0.42 0.71 15 LS Contribution 259.72 15.07 3.91 3.91 Total: -1.00 -35.23 259.72 -5.86 -41.10 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -2.39 Total: -2.07 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -2.70 Total: -16.02 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.74 Total: -27.02 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.41 Total: -17.78 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -35.23 -5.86 -41.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396052483.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.060 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds