Wall clock time and date at job start Mon Mar 30 2020 03:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99624 * 2 1 4 4 H 1.48495 * 109.46919 * 239.99840 * 3 2 1 5 5 H 1.48506 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47123 * 119.99607 * 3 2 1 7 7 C 1.37873 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00066 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.37909 * 120.08376 * 100.74581 * 10 9 7 12 12 C 1.38385 * 120.16743 * 179.72225 * 11 10 9 13 13 C 1.50698 * 119.82761 * 180.27667 * 12 11 10 14 14 O 1.42894 * 109.47411 * 270.27801 * 13 12 11 15 15 C 1.38428 * 120.34869 * 0.55215 * 12 11 10 16 16 C 1.37865 * 120.17407 * 359.73033 * 15 12 11 17 17 C 1.39832 * 120.08725 * 281.02145 * 10 9 7 18 18 C 1.47158 * 120.17259 * 0.02562 * 17 10 9 19 19 O 1.21255 * 120.00411 * 5.30447 * 18 17 10 20 20 H 0.96994 * 120.00127 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47236 * 299.99852 * 9 7 2 22 22 H 1.09001 * 109.46925 * 59.99685 * 9 7 2 23 23 H 1.07999 * 119.91818 * 359.97438 * 11 10 9 24 24 H 1.09003 * 109.46672 * 30.27915 * 13 12 11 25 25 H 1.09000 * 109.47406 * 150.27401 * 13 12 11 26 26 H 0.96701 * 114.00593 * 180.02562 * 14 13 12 27 27 H 1.08001 * 119.91426 * 179.69733 * 15 12 11 28 28 H 1.07998 * 120.08867 * 179.97438 * 16 15 12 29 29 H 1.08001 * 120.00367 * 185.30644 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2306 -3.6445 0.0005 11 6 2.5107 -4.3145 1.1729 12 6 3.4054 -5.3702 1.1738 13 6 3.7012 -6.1010 2.4582 14 8 4.7997 -5.4726 3.1217 15 6 4.0345 -5.7549 0.0023 16 6 3.7694 -5.0914 -1.1767 17 6 2.8619 -4.0270 -1.1871 18 6 2.5736 -3.3131 -2.4411 19 8 1.8621 -2.3313 -2.4301 20 1 -0.4850 0.8400 -0.0004 21 1 0.6242 -2.5567 0.8903 22 1 0.6248 -2.5570 -0.8897 23 1 2.0276 -4.0172 2.0919 24 1 2.8227 -6.0725 3.1029 25 1 3.9555 -7.1375 2.2363 26 1 5.0461 -5.8916 3.9577 27 1 4.7352 -6.5767 0.0120 28 1 4.2612 -5.3924 -2.0899 29 1 2.9957 -3.6635 -3.3714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396052483.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:16 Heat of formation + Delta-G solvation = -85.708452 kcal Electronic energy + Delta-G solvation = -14375.743761 eV Core-core repulsion = 11841.985209 eV Total energy + Delta-G solvation = -2533.758552 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.87677 -39.10632 -37.41921 -35.36735 -33.14444 -32.64125 -29.12011 -27.72098 -25.39740 -23.63608 -22.80045 -20.86255 -18.51625 -18.34174 -17.75793 -16.92197 -16.62391 -15.99703 -15.61084 -15.17200 -14.89019 -14.58024 -14.29250 -13.99079 -13.76052 -13.25479 -13.09703 -12.89253 -12.59662 -12.34758 -12.05380 -11.55447 -11.44745 -10.93047 -10.59580 -10.08031 -9.73569 -9.48726 -8.15209 -6.22001 -0.13287 0.60802 1.33224 1.37919 1.44884 1.73735 2.40450 2.94117 3.18374 3.54941 3.66961 3.94216 4.09454 4.20310 4.34583 4.46695 4.57023 4.70255 4.84269 5.00990 5.16474 5.30821 5.39479 5.43855 5.64384 5.76417 5.96531 6.09779 6.24174 6.81410 6.96249 6.96536 7.41104 8.96511 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.028828 B = 0.008959 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.056340 B = 3124.689954 C = 3648.762058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.491 4.491 8 H 0.040 0.960 9 C 0.057 3.943 10 C -0.026 4.026 11 C -0.143 4.143 12 C -0.072 4.072 13 C 0.118 3.882 14 O -0.590 6.590 15 C -0.133 4.133 16 C -0.060 4.060 17 C -0.209 4.209 18 C 0.352 3.648 19 O -0.464 6.464 20 H 0.261 0.739 21 H -0.013 1.013 22 H 0.023 0.977 23 H 0.106 0.894 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.400 0.600 27 H 0.162 0.838 28 H 0.175 0.825 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.133 -15.512 0.775 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.021 3.979 10 C -0.027 4.027 11 C -0.161 4.161 12 C -0.072 4.072 13 C 0.041 3.959 14 O -0.399 6.399 15 C -0.151 4.151 16 C -0.078 4.078 17 C -0.210 4.210 18 C 0.211 3.789 19 O -0.337 6.337 20 H 0.070 0.930 21 H 0.005 0.995 22 H 0.041 0.959 23 H 0.125 0.875 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.250 0.750 27 H 0.180 0.820 28 H 0.192 0.808 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.565 -14.480 0.276 17.356 hybrid contribution -0.186 0.851 0.716 1.127 sum 9.379 -13.629 0.992 16.574 Atomic orbital electron populations 1.70073 1.07553 1.27387 1.52431 1.25793 0.95726 1.02705 0.95132 0.85612 0.78433 0.78828 0.78827 1.19891 1.20314 1.19190 1.20933 0.91872 0.91087 1.49027 0.94206 1.18205 0.93125 0.91135 0.95471 1.20806 0.94815 0.93630 0.93422 1.20987 1.00991 0.97034 0.97081 1.20211 0.95258 0.95183 0.96589 1.21079 0.89590 0.95309 0.89898 1.86550 1.51917 1.60202 1.41224 1.21295 1.00486 1.01935 0.91396 1.21714 0.94103 0.91887 1.00095 1.21201 1.02608 1.01119 0.96087 1.24741 0.78608 0.82513 0.93043 1.90749 1.29728 1.23899 1.89297 0.93020 0.99512 0.95911 0.87536 0.92282 0.89197 0.74969 0.82034 0.80809 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.86 13.29 21.45 0.28 -60.57 15 2 C 0.00 0.20 5.46 84.65 0.46 0.67 15 3 Si 0.96 48.31 29.54 68.60 2.03 50.34 15 4 H -0.27 -13.50 7.11 99.48 0.71 -12.79 15 5 H -0.28 -13.47 7.11 99.48 0.71 -12.76 15 6 H -0.27 -12.85 7.11 99.48 0.71 -12.14 15 7 C -0.49 -30.47 7.51 25.60 0.19 -30.28 15 8 H 0.04 2.47 7.74 -2.91 -0.02 2.44 15 9 C 0.06 3.33 4.40 29.10 0.13 3.46 15 10 C -0.03 -1.23 5.12 -19.56 -0.10 -1.33 15 11 C -0.14 -5.79 9.30 22.23 0.21 -5.59 15 12 C -0.07 -2.22 5.52 -19.78 -0.11 -2.33 15 13 C 0.12 2.63 7.16 71.24 0.51 3.14 15 14 O -0.59 -14.07 13.64 -148.98 -2.03 -16.10 15 15 C -0.13 -3.40 9.68 22.23 0.22 -3.18 15 16 C -0.06 -1.61 9.80 22.58 0.22 -1.39 15 17 C -0.21 -7.95 5.86 -20.15 -0.12 -8.07 15 18 C 0.35 13.27 11.38 70.16 0.80 14.07 15 19 O -0.46 -23.88 13.05 -2.95 -0.04 -23.92 15 20 H 0.26 16.01 8.31 -92.71 -0.77 15.24 15 21 H -0.01 -0.83 8.00 -2.39 -0.02 -0.85 15 22 H 0.02 1.45 6.17 -2.39 -0.01 1.44 15 23 H 0.11 4.44 8.03 -2.91 -0.02 4.42 15 24 H 0.06 1.24 8.08 -2.39 -0.02 1.22 15 25 H 0.09 1.33 8.08 -2.39 -0.02 1.31 15 26 H 0.40 4.83 9.12 -74.06 -0.68 4.16 15 27 H 0.16 2.73 8.06 -2.91 -0.02 2.71 15 28 H 0.17 2.83 8.06 -2.91 -0.02 2.81 15 29 H 0.15 3.52 8.06 -2.91 -0.02 3.50 15 Total: -1.00 -83.53 259.72 3.13 -80.39 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: 0.49 Total: 0.69 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 2.41 Total: -30.84 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.28 Total: -60.57 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -2.07 Total: -40.02 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -83.53 3.13 -80.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396052483.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.315 kcal (2) G-P(sol) polarization free energy of solvation -83.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds