Wall clock time and date at job start Mon Mar 30 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99914 * 2 1 4 4 H 1.48497 * 109.47128 * 239.99937 * 3 2 1 5 5 H 1.48507 * 109.47070 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47492 * 119.99370 * 3 2 1 7 7 C 1.37877 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99417 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00309 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47272 * 179.97438 * 9 7 2 11 11 C 1.38430 * 119.82593 * 89.99588 * 10 9 7 12 12 C 1.37869 * 120.17025 * 180.02562 * 11 10 9 13 13 C 1.39866 * 119.82384 * 359.97438 * 12 11 10 14 14 C 1.47173 * 120.16890 * 179.97438 * 13 12 11 15 15 O 1.21249 * 119.99872 * 0.02562 * 14 13 12 16 16 C 1.39831 * 119.66184 * 359.97438 * 13 12 11 17 17 C 1.50696 * 120.08897 * 179.97438 * 16 13 12 18 18 O 1.42903 * 109.47131 * 179.97438 * 17 16 13 19 19 C 1.37909 * 119.82092 * 0.27791 * 16 13 12 20 20 H 0.96996 * 120.00348 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.47353 * 59.99858 * 9 7 2 22 22 H 1.09003 * 109.47055 * 299.99653 * 9 7 2 23 23 H 1.07997 * 119.91430 * 359.97438 * 11 10 9 24 24 H 1.07998 * 120.08356 * 179.97438 * 12 11 10 25 25 H 1.08000 * 119.99969 * 180.02562 * 14 13 12 26 26 H 1.09008 * 109.47144 * 60.00671 * 17 16 13 27 27 H 1.08999 * 109.47358 * 300.00260 * 17 16 13 28 28 H 0.96700 * 114.00311 * 300.00591 * 18 17 16 29 29 H 1.07998 * 119.91287 * 179.72239 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6778 -4.1678 1.2015 12 6 3.5741 -5.2154 1.2098 13 6 4.0308 -5.7497 0.0005 14 6 4.9881 -6.8676 0.0005 15 8 5.3825 -7.3280 1.0506 16 6 3.5733 -5.2163 -1.2084 17 6 4.0594 -5.7842 -2.5168 18 8 3.4513 -5.0760 -3.5988 19 6 2.6807 -4.1650 -1.2000 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 2.3245 -3.7539 2.1343 24 1 3.9227 -5.6223 2.1475 25 1 5.3393 -7.2778 -0.9348 26 1 3.7911 -6.8390 -2.5772 27 1 5.1428 -5.6808 -2.5777 28 1 2.4856 -5.1250 -3.6076 29 1 2.3298 -3.7490 -2.1328 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396053304.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:28 Heat of formation + Delta-G solvation = -96.292455 kcal Electronic energy + Delta-G solvation = -14085.173033 eV Core-core repulsion = 11550.955524 eV Total energy + Delta-G solvation = -2534.217509 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.01616 -39.34375 -37.62435 -35.49139 -33.48279 -32.14905 -29.60062 -27.14310 -26.15969 -23.82409 -22.45865 -21.17920 -18.59346 -18.23006 -17.98513 -16.93976 -16.69250 -15.90613 -15.60979 -15.33311 -14.93359 -14.85647 -14.72544 -14.49666 -13.60425 -13.31613 -13.21290 -12.63427 -12.53413 -12.46347 -12.00332 -11.64300 -11.59003 -11.22469 -10.67141 -10.62944 -9.75095 -9.52044 -8.24695 -6.37804 -0.26188 0.44341 1.38599 1.40888 1.48616 1.56719 2.37533 2.88360 3.07252 3.34098 3.57526 3.71840 3.95954 4.12484 4.34193 4.46334 4.58541 4.59828 4.78723 4.93699 4.98922 5.27799 5.29416 5.36128 5.48196 5.69234 5.92617 5.97248 6.13286 6.47818 6.73811 6.81115 7.31096 8.84773 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.032299 B = 0.007192 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.693078 B = 3892.264815 C = 4286.874174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.051 3.949 10 C -0.022 4.022 11 C -0.156 4.156 12 C -0.061 4.061 13 C -0.222 4.222 14 C 0.398 3.602 15 O -0.505 6.505 16 C -0.063 4.063 17 C 0.114 3.886 18 O -0.580 6.580 19 C -0.143 4.143 20 H 0.267 0.733 21 H 0.013 0.987 22 H 0.006 0.994 23 H 0.116 0.884 24 H 0.133 0.867 25 H 0.156 0.844 26 H 0.102 0.898 27 H 0.124 0.876 28 H 0.392 0.608 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.316 -12.055 -4.788 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.015 3.985 10 C -0.022 4.022 11 C -0.174 4.174 12 C -0.079 4.079 13 C -0.223 4.223 14 C 0.260 3.740 15 O -0.381 6.381 16 C -0.064 4.064 17 C 0.037 3.963 18 O -0.387 6.387 19 C -0.161 4.161 20 H 0.076 0.924 21 H 0.031 0.969 22 H 0.024 0.976 23 H 0.134 0.866 24 H 0.151 0.849 25 H 0.172 0.828 26 H 0.120 0.880 27 H 0.141 0.859 28 H 0.241 0.759 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.985 -12.060 -4.382 15.113 hybrid contribution -0.854 1.310 0.572 1.665 sum 7.130 -10.750 -3.810 13.451 Atomic orbital electron populations 1.70048 1.07561 1.28155 1.50856 1.25866 0.95750 1.02956 0.94397 0.85524 0.78355 0.78226 0.79129 1.19210 1.20432 1.19501 1.21271 0.92981 0.91136 1.51618 0.92936 1.18200 0.92957 0.90915 0.96477 1.20728 0.94438 0.93256 0.93787 1.21096 1.00193 0.98202 0.97946 1.21455 0.93962 0.93905 0.98615 1.20835 1.05171 1.03235 0.93082 1.24558 0.76156 0.79063 0.94248 1.90495 1.51755 1.57038 1.38765 1.21179 0.94297 0.94336 0.96547 1.21529 0.99262 0.95758 0.79788 1.86514 1.26612 1.76775 1.48798 1.20921 0.99839 0.97546 0.97831 0.92423 0.96860 0.97576 0.86578 0.84912 0.82794 0.88019 0.85873 0.75862 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.80 13.29 21.45 0.28 -54.51 15 2 C 0.01 0.51 5.46 84.66 0.46 0.98 15 3 Si 0.96 43.81 29.54 68.60 2.03 45.84 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 7 C -0.53 -29.91 9.09 25.60 0.23 -29.67 15 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 15 9 C 0.05 2.66 5.09 29.10 0.15 2.81 15 10 C -0.02 -0.93 5.08 -19.78 -0.10 -1.03 15 11 C -0.16 -6.05 9.68 22.23 0.22 -5.83 15 12 C -0.06 -2.01 9.60 22.58 0.22 -1.79 15 13 C -0.22 -6.13 5.87 -20.15 -0.12 -6.25 15 14 C 0.40 8.57 11.02 70.17 0.77 9.34 15 15 O -0.50 -14.78 17.17 -2.93 -0.05 -14.83 15 16 C -0.06 -1.68 5.92 -19.56 -0.12 -1.80 15 17 C 0.11 2.01 6.04 71.23 0.43 2.44 15 18 O -0.58 -12.72 12.68 -148.98 -1.89 -14.61 15 19 C -0.14 -5.05 8.85 22.23 0.20 -4.85 15 20 H 0.27 14.84 8.31 -92.71 -0.77 14.06 15 21 H 0.01 0.71 8.08 -2.39 -0.02 0.69 15 22 H 0.01 0.33 8.08 -2.39 -0.02 0.31 15 23 H 0.12 4.52 8.06 -2.91 -0.02 4.50 15 24 H 0.13 4.06 7.65 -2.91 -0.02 4.04 15 25 H 0.16 1.61 7.02 -2.91 -0.02 1.59 15 26 H 0.10 1.08 8.05 -2.38 -0.02 1.06 15 27 H 0.12 1.74 8.05 -2.39 -0.02 1.72 15 28 H 0.39 6.63 8.14 -74.06 -0.60 6.03 15 29 H 0.13 4.50 6.60 -2.91 -0.02 4.48 15 Total: -1.00 -69.52 261.47 3.28 -66.24 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.56 Total: 7.52 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 2.34 Total: -35.65 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.28 Total: -54.51 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -1.94 Total: -29.44 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -69.52 3.28 -66.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396053304.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.049 kcal (2) G-P(sol) polarization free energy of solvation -69.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds