Wall clock time and date at job start Mon Mar 30 2020 03:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38372 * 119.84555 * 2 1 4 4 C 1.37947 * 120.14939 * 179.97438 * 3 2 1 5 5 C 1.39626 * 119.84448 * 0.26453 * 4 3 2 6 6 C 1.47733 * 120.14512 * 179.70064 * 5 4 3 7 7 O 1.21468 * 120.00116 * 359.97438 * 6 5 4 8 8 O 1.34709 * 119.99568 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99855 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47308 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99913 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99824 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00024 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00203 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47338 * 89.99892 * 14 12 10 16 16 H 1.48506 * 109.47378 * 209.99396 * 14 12 10 17 17 H 1.48503 * 109.47384 * 329.99839 * 14 12 10 18 18 C 1.39630 * 119.70471 * 359.43966 * 5 4 3 19 19 C 1.37944 * 119.84125 * 0.57764 * 18 5 4 20 20 H 1.09003 * 109.47272 * 90.00406 * 1 2 3 21 21 H 1.08998 * 109.47515 * 209.99858 * 1 2 3 22 22 H 1.08999 * 109.47649 * 330.00542 * 1 2 3 23 23 H 1.07999 * 119.92634 * 359.97438 * 3 2 1 24 24 H 1.08002 * 120.07327 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.47188 * 299.99648 * 9 8 6 26 26 H 1.09001 * 109.47428 * 59.99501 * 9 8 6 27 27 H 0.96998 * 120.00076 * 179.97438 * 13 12 10 28 28 H 1.07997 * 120.07814 * 180.28070 * 18 5 4 29 29 H 1.08003 * 119.91752 * 179.68020 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2002 0.0000 4 6 3.5750 1.2075 0.0005 5 6 4.2763 0.0001 -0.0045 6 6 5.7536 0.0002 -0.0107 7 8 6.3609 1.0522 -0.0118 8 8 6.4271 -1.1664 -0.0150 9 6 7.8771 -1.0903 -0.0215 10 6 8.4532 -2.4829 -0.0250 11 1 7.7953 -3.3394 -0.0222 12 6 9.8201 -2.6634 -0.0318 13 7 10.3229 -3.8787 -0.0344 14 14 10.9579 -1.1820 -0.0360 15 1 11.2662 -0.7906 1.3630 16 1 12.2177 -1.5273 -0.7424 17 1 10.2944 -0.0502 -0.7318 18 6 3.5751 -1.2073 0.0018 19 6 2.1956 -1.2000 0.0009 20 1 -0.3634 -0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5137 23 1 1.6518 2.1333 -0.0004 24 1 4.1113 2.1450 0.0001 25 1 8.2090 -0.5573 -0.9124 26 1 8.2172 -0.5591 0.8675 27 1 11.2845 -4.0057 -0.0396 28 1 4.1114 -2.1447 0.0025 29 1 1.6520 -2.1332 0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526916146.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:30 Heat of formation + Delta-G solvation = -72.397244 kcal Electronic energy + Delta-G solvation = -13875.715307 eV Core-core repulsion = 11342.533972 eV Total energy + Delta-G solvation = -2533.181335 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.01034 -38.64035 -35.71282 -33.03938 -32.71839 -31.01186 -28.83251 -27.39619 -23.34500 -22.60344 -21.78448 -20.16861 -17.81606 -16.51452 -16.44906 -15.53811 -15.26939 -14.98380 -14.52555 -13.95387 -13.88622 -13.49891 -12.80485 -12.72825 -12.42238 -12.04602 -11.90262 -11.55192 -11.20710 -11.02687 -10.96939 -10.14223 -9.83792 -9.74604 -9.42553 -9.00790 -8.77884 -8.70152 -6.23799 -4.26195 0.82364 1.36761 2.91950 3.21987 3.27979 3.34961 3.46506 3.89326 4.27790 4.68290 4.75258 4.95789 5.07764 5.10738 5.33867 5.36866 5.40523 5.62138 5.64796 5.91933 6.00168 6.27764 6.40355 6.46148 6.49856 6.78855 6.86509 7.16139 7.44811 8.17746 8.55802 8.83136 9.32088 10.87960 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.061460 B = 0.005774 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.471438 B = 4848.142354 C = 5283.158783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 C -0.137 4.137 4 C -0.056 4.056 5 C -0.121 4.121 6 C 0.495 3.505 7 O -0.522 6.522 8 O -0.339 6.339 9 C 0.179 3.821 10 C -0.532 4.532 11 H 0.088 0.912 12 C 0.079 3.921 13 N -0.887 5.887 14 Si 0.871 3.129 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.262 1.262 18 C -0.056 4.056 19 C -0.136 4.136 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.128 0.872 24 H 0.136 0.864 25 H 0.028 0.972 26 H 0.023 0.977 27 H 0.270 0.730 28 H 0.143 0.857 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.586 7.720 0.024 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.063 4.063 3 C -0.155 4.155 4 C -0.075 4.075 5 C -0.122 4.122 6 C 0.340 3.660 7 O -0.414 6.414 8 O -0.254 6.254 9 C 0.107 3.893 10 C -0.570 4.570 11 H 0.106 0.894 12 C -0.124 4.124 13 N -0.525 5.525 14 Si 0.697 3.303 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.186 1.186 18 C -0.074 4.074 19 C -0.154 4.154 20 H 0.092 0.908 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.146 0.854 24 H 0.154 0.846 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.161 0.839 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.172 7.871 0.023 18.890 hybrid contribution 0.933 0.746 0.010 1.195 sum -16.239 8.617 0.033 18.384 Atomic orbital electron populations 1.20850 0.90990 1.02981 1.02544 1.20173 0.96261 0.93276 0.96574 1.20940 0.93559 0.97778 1.03221 1.21272 0.93935 0.97523 0.94734 1.19344 0.90268 0.94794 1.07811 1.21180 0.88633 0.82927 0.73274 1.90758 1.70510 1.33288 1.46839 1.86527 1.25404 1.31611 1.81895 1.21304 0.71291 0.99620 0.97114 1.20785 0.92490 0.90680 1.53022 0.89433 1.24667 0.97433 0.96160 0.94148 1.69850 1.12976 1.20489 1.49155 0.86904 0.80834 0.83297 0.79250 1.19569 1.20412 1.18620 1.21622 0.94134 0.98230 0.93426 1.21047 0.93921 0.97793 1.02629 0.90849 0.91259 0.91379 0.85418 0.84644 0.95409 0.95865 0.92020 0.83871 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.00 36.00 0.36 -0.48 15 2 C -0.06 -0.66 5.89 -104.53 -0.62 -1.28 15 3 C -0.14 -1.53 9.68 -39.64 -0.38 -1.92 15 4 C -0.06 -0.80 9.60 -39.17 -0.38 -1.17 15 5 C -0.12 -2.03 5.87 -104.98 -0.62 -2.64 15 6 C 0.50 10.50 7.90 34.61 0.27 10.77 15 7 O -0.52 -12.10 16.14 -19.24 -0.31 -12.41 15 8 O -0.34 -8.07 9.46 -40.52 -0.38 -8.45 15 9 C 0.18 4.70 4.30 36.01 0.15 4.86 15 10 C -0.53 -15.57 10.00 -34.44 -0.34 -15.91 15 11 H 0.09 2.73 8.06 -52.49 -0.42 2.31 15 12 C 0.08 2.31 5.47 -17.82 -0.10 2.21 15 13 N -0.89 -26.82 13.96 55.43 0.77 -26.05 15 14 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 15 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 17 H -0.26 -6.38 6.54 56.52 0.37 -6.01 15 18 C -0.06 -0.82 9.62 -39.17 -0.38 -1.20 15 19 C -0.14 -1.58 9.68 -39.64 -0.38 -1.96 15 20 H 0.07 0.46 8.14 -51.93 -0.42 0.04 15 21 H 0.07 0.43 8.08 -51.93 -0.42 0.01 15 22 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 15 23 H 0.13 1.07 8.06 -52.49 -0.42 0.65 15 24 H 0.14 1.86 7.65 -52.49 -0.40 1.46 15 25 H 0.03 0.74 7.19 -51.93 -0.37 0.37 15 26 H 0.02 0.61 7.56 -51.93 -0.39 0.22 15 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 15 28 H 0.14 2.13 7.61 -52.49 -0.40 1.73 15 29 H 0.13 1.18 8.06 -52.48 -0.42 0.75 15 LS Contribution 262.58 15.07 3.96 3.96 Total: -1.00 -32.21 262.58 -6.30 -38.51 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: -3.26 Total: -3.66 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.41 Total: -8.72 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.77 Total: -26.05 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.69 Total: -20.86 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.21 -6.30 -38.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526916146.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.886 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds