Wall clock time and date at job start Mon Mar 30 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99629 * 2 1 4 4 H 1.48498 * 109.47074 * 269.99975 * 3 2 1 5 5 H 1.48501 * 109.47143 * 30.00215 * 3 2 1 6 6 H 1.48509 * 109.46680 * 150.00136 * 3 2 1 7 7 C 1.37877 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99622 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00173 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47850 * 59.99523 * 9 7 2 11 11 O 1.42902 * 109.47357 * 299.99596 * 9 7 2 12 12 C 1.50702 * 109.47460 * 179.97438 * 9 7 2 13 13 C 1.37975 * 119.87930 * 95.01556 * 12 9 7 14 14 C 1.38245 * 120.35013 * 179.97438 * 13 12 9 15 15 C 1.38392 * 119.76587 * 359.88139 * 14 13 12 16 16 C 1.37692 * 119.98100 * 359.92585 * 15 14 13 17 17 C 1.38928 * 120.78260 * 0.38808 * 16 15 14 18 18 O 1.36135 * 111.22546 * 178.94938 * 17 16 15 19 19 C 1.43867 * 109.24893 * 19.03245 * 18 17 16 20 20 C 1.51646 * 132.18400 * 180.41864 * 16 15 14 21 21 H 0.96993 * 120.00201 * 359.97438 * 1 2 3 22 22 H 0.96701 * 113.99930 * 300.00741 * 11 9 7 23 23 H 1.08001 * 119.82772 * 0.02562 * 13 12 9 24 24 H 1.07998 * 120.11363 * 179.84161 * 14 13 12 25 25 H 1.08000 * 120.00658 * 180.02562 * 15 14 13 26 26 H 1.09004 * 110.77780 * 213.92599 * 19 18 17 27 27 H 1.09000 * 110.75985 * 90.55142 * 19 18 17 28 28 H 1.09002 * 110.93880 * 282.74669 * 20 16 15 29 29 H 1.09006 * 110.93767 * 46.39517 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 8 0.4292 -2.5746 1.1671 12 6 2.2305 -3.6446 0.0005 13 6 2.5976 -4.2350 1.1923 14 6 3.4948 -5.2867 1.2036 15 6 4.0248 -5.7505 0.0122 16 6 3.6568 -5.1653 -1.1786 17 6 2.7611 -4.1036 -1.2021 18 8 2.5536 -3.6620 -2.4730 19 6 2.9569 -4.6838 -3.4020 20 6 4.0485 -5.4481 -2.6160 21 1 -0.4850 0.8400 0.0004 22 1 0.9211 -2.5290 1.9984 23 1 2.1813 -3.8741 2.1212 24 1 3.7815 -5.7444 2.1388 25 1 4.7257 -6.5722 0.0165 26 1 3.3717 -4.2411 -4.3077 27 1 2.1208 -5.3412 -3.6403 28 1 5.0385 -5.0486 -2.8358 29 1 4.0055 -6.5164 -2.8285 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606260977.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:37 Heat of formation + Delta-G solvation = -81.437865 kcal Electronic energy + Delta-G solvation = -14775.782340 eV Core-core repulsion = 12242.208975 eV Total energy + Delta-G solvation = -2533.573366 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.92291 -38.83847 -37.15862 -34.33427 -33.45826 -31.42032 -29.94435 -28.51362 -25.21013 -23.93297 -22.91051 -21.44253 -19.16844 -18.30125 -17.55944 -17.09937 -16.80388 -16.64426 -15.65833 -15.12173 -14.85045 -14.34503 -14.01723 -13.80910 -13.48828 -13.39796 -12.88432 -12.83670 -12.58401 -12.52303 -12.12034 -12.02000 -11.64589 -11.20872 -10.79159 -10.36189 -9.50032 -8.92422 -8.15325 -6.43354 0.46226 0.56688 1.36230 1.37827 1.49145 2.36102 2.54875 2.88587 3.07083 3.57296 3.77513 4.05687 4.17080 4.22126 4.31404 4.48588 4.59161 4.62053 4.73988 4.91726 4.95708 5.14604 5.32614 5.52877 5.58178 5.62633 5.82795 5.93600 6.00461 6.41746 6.65383 7.26112 7.44646 8.87517 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.031049 B = 0.009834 C = 0.008685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.597229 B = 2846.679922 C = 3223.204216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.025 3.975 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.569 4.569 8 H 0.048 0.952 9 C 0.269 3.731 10 H 0.018 0.982 11 O -0.575 6.575 12 C -0.130 4.130 13 C -0.101 4.101 14 C -0.142 4.142 15 C -0.086 4.086 16 C -0.185 4.185 17 C 0.075 3.925 18 O -0.336 6.336 19 C 0.035 3.965 20 C -0.095 4.095 21 H 0.264 0.736 22 H 0.358 0.642 23 H 0.132 0.868 24 H 0.160 0.840 25 H 0.160 0.840 26 H 0.125 0.875 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.785 -11.845 -2.214 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.607 4.607 8 H 0.066 0.934 9 C 0.212 3.788 10 H 0.036 0.964 11 O -0.380 6.380 12 C -0.131 4.131 13 C -0.119 4.119 14 C -0.160 4.160 15 C -0.104 4.104 16 C -0.186 4.186 17 C 0.030 3.970 18 O -0.251 6.251 19 C -0.039 4.039 20 C -0.131 4.131 21 H 0.073 0.927 22 H 0.205 0.795 23 H 0.150 0.850 24 H 0.177 0.823 25 H 0.177 0.823 26 H 0.143 0.857 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.052 -11.586 -2.768 14.961 hybrid contribution 0.341 1.182 0.173 1.242 sum 9.393 -10.404 -2.595 14.254 Atomic orbital electron populations 1.70213 1.07632 1.27585 1.48340 1.25948 0.95615 1.02959 0.93219 0.85494 0.78761 0.78485 0.78468 1.19978 1.20038 1.18863 1.21738 0.92780 0.91937 1.54201 0.93361 1.17942 0.86588 0.89652 0.84622 0.96431 1.86526 1.38970 1.96408 1.16090 1.20490 1.00960 0.99819 0.91877 1.20851 0.98155 0.96683 0.96194 1.21347 0.98090 0.97187 0.99385 1.20610 0.99884 1.00080 0.89786 1.21235 1.00115 0.99335 0.97906 1.19626 0.96601 0.95316 0.85461 1.86918 1.83122 1.41238 1.13824 1.24191 0.97619 0.89107 0.92971 1.21803 0.99707 1.03339 0.88280 0.92730 0.79537 0.85027 0.82276 0.82290 0.85726 0.90072 0.88151 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.44 12.84 21.45 0.28 -56.16 15 2 C 0.02 1.46 5.40 84.65 0.46 1.92 15 3 Si 0.96 45.66 29.54 68.60 2.03 47.68 15 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.26 -12.03 7.11 99.48 0.71 -11.32 15 7 C -0.57 -34.05 8.75 25.60 0.22 -33.83 15 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 15 9 C 0.27 15.41 3.03 29.10 0.09 15.50 15 10 H 0.02 1.17 8.12 -2.39 -0.02 1.15 15 11 O -0.57 -32.00 12.38 -148.98 -1.84 -33.84 15 12 C -0.13 -6.19 5.03 -19.69 -0.10 -6.29 15 13 C -0.10 -3.89 9.28 22.21 0.21 -3.69 15 14 C -0.14 -4.22 10.07 22.31 0.22 -3.99 15 15 C -0.09 -2.38 10.03 22.18 0.22 -2.16 15 16 C -0.19 -6.05 6.27 -19.53 -0.12 -6.18 15 17 C 0.07 3.26 6.75 22.68 0.15 3.41 15 18 O -0.34 -14.68 11.05 -95.08 -1.05 -15.73 15 19 C 0.04 0.99 8.01 72.56 0.58 1.57 15 20 C -0.09 -2.23 7.11 30.73 0.22 -2.01 15 21 H 0.26 15.45 8.31 -92.71 -0.77 14.68 15 22 H 0.36 17.17 7.30 -74.06 -0.54 16.63 15 23 H 0.13 4.72 6.37 -2.91 -0.02 4.70 15 24 H 0.16 3.39 8.06 -2.91 -0.02 3.37 15 25 H 0.16 2.99 8.06 -2.91 -0.02 2.96 15 26 H 0.12 2.72 8.14 -2.38 -0.02 2.70 15 27 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 28 H 0.10 2.07 8.14 -2.39 -0.02 2.05 15 29 H 0.12 1.97 8.14 -2.38 -0.02 1.95 15 Total: -1.00 -76.04 253.37 2.19 -73.85 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.62 Total: 19.95 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 2.15 Total: -35.75 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.28 Total: -56.16 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -2.90 Total: -49.58 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -76.04 2.19 -73.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606260977.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.587 kcal (2) G-P(sol) polarization free energy of solvation -76.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds