Wall clock time and date at job start Mon Mar 30 2020 03:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00300 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 359.97438 * 7 2 1 9 9 N 1.37104 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 H 1.08999 * 115.55675 * 34.40964 * 12 10 9 14 14 C 1.53001 * 117.49592 * 180.08775 * 12 10 9 15 15 H 1.08997 * 117.49930 * 359.97438 * 14 12 10 16 16 C 1.53009 * 117.49808 * 214.97786 * 14 12 10 17 17 N 1.46898 * 109.47034 * 174.99896 * 16 14 12 18 18 C 1.53001 * 117.49744 * 248.74262 * 12 10 9 19 19 F 1.39904 * 117.49828 * 359.97438 * 18 12 10 20 20 F 1.39898 * 117.50231 * 145.00146 * 18 12 10 21 21 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46700 * 294.99936 * 16 14 12 24 24 H 1.08998 * 109.46978 * 54.99342 * 16 14 12 25 25 H 1.00899 * 111.00126 * 56.04511 * 17 16 14 26 26 H 1.00907 * 110.99635 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0072 11 8 3.4473 -3.4211 -0.0072 12 6 5.5607 -2.3705 -0.0141 13 1 6.0334 -1.5607 0.5417 14 6 6.2671 -3.7277 -0.0230 15 1 5.6419 -4.6205 -0.0234 16 6 7.5832 -3.8441 0.7487 17 7 8.0439 -5.2388 0.7234 18 6 6.2614 -2.8592 -1.2834 19 9 5.4540 -3.2724 -2.3486 20 9 7.4597 -2.2325 -1.6419 21 1 -0.4850 0.8400 0.0004 22 1 3.8649 -0.3633 -0.0014 23 1 8.3343 -3.2050 0.2844 24 1 7.4280 -3.5313 1.7812 25 1 8.1334 -5.5730 -0.2244 26 1 8.9121 -5.3420 1.2272 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715080202.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:24 Heat of formation + Delta-G solvation = -128.905765 kcal Electronic energy + Delta-G solvation = -14958.439473 eV Core-core repulsion = 11900.870966 eV Total energy + Delta-G solvation = -3057.568507 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.83014 -48.49958 -40.64540 -37.86095 -36.10415 -34.29721 -33.80840 -28.09672 -26.30555 -24.34562 -22.06853 -21.39352 -20.45636 -18.97767 -18.06457 -17.50679 -17.20910 -16.73963 -16.58167 -15.72192 -15.36088 -15.18036 -15.02757 -14.74124 -14.62050 -14.43740 -14.25846 -13.69638 -13.05406 -12.95333 -12.49262 -12.01979 -11.96357 -11.61364 -11.13270 -10.66198 -10.35788 -9.65109 -8.49069 -6.11326 1.15743 1.28496 1.41942 1.43328 1.83585 2.17812 2.35087 2.42569 3.07397 3.11154 3.36448 3.52000 3.90023 3.99699 4.12240 4.39979 4.47116 4.69393 5.01497 5.44469 5.84242 6.16215 6.45501 6.60239 6.74346 7.24059 7.76863 8.67603 Molecular weight = 220.08amu Principal moments of inertia in cm(-1) A = 0.041803 B = 0.007875 C = 0.007562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.654191 B = 3554.549964 C = 3701.898727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.961 3.039 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.228 1.228 7 C -0.335 4.335 8 H 0.060 0.940 9 N -0.572 5.572 10 C 0.469 3.531 11 O -0.612 6.612 12 C -0.168 4.168 13 H 0.182 0.818 14 C -0.095 4.095 15 H 0.124 0.876 16 C 0.095 3.905 17 N -0.857 5.857 18 C 0.206 3.794 19 F -0.172 7.172 20 F -0.148 7.148 21 H 0.283 0.717 22 H 0.392 0.608 23 H 0.061 0.939 24 H 0.103 0.897 25 H 0.347 0.653 26 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.535 0.058 0.972 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.208 4.208 3 Si 0.780 3.220 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.151 1.151 7 C -0.464 4.464 8 H 0.078 0.922 9 N -0.211 5.211 10 C 0.257 3.743 11 O -0.498 6.498 12 C -0.190 4.190 13 H 0.200 0.800 14 C -0.116 4.116 15 H 0.142 0.858 16 C -0.035 4.035 17 N -0.389 5.389 18 C 0.168 3.832 19 F -0.153 7.153 20 F -0.128 7.128 21 H 0.093 0.907 22 H 0.228 0.772 23 H 0.079 0.921 24 H 0.122 0.878 25 H 0.160 0.840 26 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 18.260 -0.673 1.329 18.321 hybrid contribution 0.349 1.253 -0.957 1.615 sum 18.609 0.580 0.372 18.622 Atomic orbital electron populations 1.69784 1.08108 1.29645 1.48732 1.26129 0.96496 1.02728 0.95445 0.85421 0.79761 0.76707 0.80086 1.18272 1.19350 1.15138 1.19054 0.80951 0.95349 1.51061 0.92197 1.41935 1.06149 1.07287 1.65694 1.19380 0.88274 0.83757 0.82939 1.90569 1.70578 1.32670 1.55973 1.23721 0.92585 1.03208 0.99514 0.80034 1.23767 1.00338 0.95154 0.92299 0.85760 1.21345 0.90842 0.90800 1.00558 1.58569 1.38848 1.19580 1.21936 1.20150 0.80443 1.02238 0.80329 1.93030 1.72603 1.90449 1.59205 1.93007 1.43878 1.82869 1.93064 0.90746 0.77191 0.92114 0.87850 0.83995 0.82363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.93 13.96 21.66 0.30 -54.63 15 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 15 3 Si 0.96 38.10 27.74 68.60 1.90 40.01 15 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 15 6 H -0.23 -7.53 6.52 99.48 0.65 -6.88 15 7 C -0.34 -19.65 10.16 84.04 0.85 -18.79 15 8 H 0.06 4.17 7.39 -2.91 -0.02 4.15 15 9 N -0.57 -27.32 5.09 -306.98 -1.56 -28.88 15 10 C 0.47 21.68 7.20 87.66 0.63 22.31 15 11 O -0.61 -34.47 15.83 -3.07 -0.05 -34.52 15 12 C -0.17 -5.28 5.89 -11.54 -0.07 -5.35 15 13 H 0.18 4.00 8.14 -2.39 -0.02 3.98 15 14 C -0.10 -2.66 5.45 -10.77 -0.06 -2.72 15 15 H 0.12 4.21 7.67 -2.39 -0.02 4.19 15 16 C 0.10 1.77 7.05 86.31 0.61 2.38 15 17 N -0.86 -14.59 9.62 -186.71 -1.80 -16.39 15 18 C 0.21 6.32 5.14 30.62 0.16 6.47 15 19 F -0.17 -6.63 17.13 44.97 0.77 -5.86 15 20 F -0.15 -3.83 16.48 44.97 0.74 -3.09 15 21 H 0.28 15.28 8.31 -92.71 -0.77 14.51 15 22 H 0.39 15.44 5.76 -92.71 -0.53 14.91 15 23 H 0.06 0.94 7.06 -2.39 -0.02 0.92 15 24 H 0.10 1.72 8.14 -2.39 -0.02 1.70 15 25 H 0.35 5.54 8.99 -89.69 -0.81 4.73 15 26 H 0.36 4.16 9.08 -89.69 -0.81 3.35 15 Total: -1.00 -74.27 243.51 1.94 -72.33 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.96 Total: 26.68 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 2.59 Total: 4.35 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -3.06 Total: -99.90 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.05 Total: -34.52 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 1.51 Total: -8.94 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.01 kcal Total: -74.27 1.94 -72.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715080202.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.579 kcal (2) G-P(sol) polarization free energy of solvation -74.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds