Wall clock time and date at job start Mon Mar 30 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86789 * 120.00267 * 2 1 4 4 H 1.48500 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47274 * 299.99753 * 3 2 1 6 6 H 1.48506 * 109.47471 * 59.99944 * 3 2 1 7 7 C 1.38954 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99463 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99891 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99950 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99781 * 179.97438 * 10 9 7 13 13 H 1.08999 * 115.56572 * 325.69110 * 12 10 9 14 14 C 1.53005 * 117.49832 * 179.97438 * 12 10 9 15 15 H 1.08997 * 117.51207 * 359.97438 * 14 12 10 16 16 C 1.53000 * 117.49697 * 145.02003 * 14 12 10 17 17 N 1.46901 * 109.46769 * 185.01558 * 16 14 12 18 18 C 1.52998 * 59.99948 * 252.51200 * 14 12 10 19 19 F 1.39906 * 117.49687 * 107.49113 * 18 14 12 20 20 F 1.39905 * 117.49772 * 252.48370 * 18 14 12 21 21 H 0.97006 * 119.99185 * 359.97438 * 1 2 3 22 22 H 0.97005 * 120.00297 * 359.97438 * 9 7 2 23 23 H 1.09002 * 109.47398 * 305.01853 * 16 14 12 24 24 H 1.09001 * 109.47194 * 65.02034 * 16 14 12 25 25 H 1.00898 * 110.99877 * 56.04956 * 17 16 14 26 26 H 1.00908 * 110.99847 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8896 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8629 0.0011 13 1 0.3052 -4.8640 0.5557 14 6 2.0655 -6.1534 0.0005 15 1 3.1514 -6.0587 -0.0008 16 6 1.5077 -7.3466 0.7790 17 7 2.4853 -8.4430 0.7612 18 6 1.3177 -5.7221 -1.2627 19 9 2.0800 -5.2361 -2.3304 20 9 0.1766 -6.4494 -1.6179 21 1 -0.4849 0.8402 0.0004 22 1 0.3532 -2.3906 0.0005 23 1 1.3137 -7.0495 1.8096 24 1 0.5791 -7.6804 0.3161 25 1 3.3756 -8.1395 1.1263 26 1 2.1399 -9.2437 1.2689 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715080209.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:28 Heat of formation + Delta-G solvation = -110.532635 kcal Electronic energy + Delta-G solvation = -14898.036640 eV Core-core repulsion = 11841.264852 eV Total energy + Delta-G solvation = -3056.771788 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.076 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.31628 -46.96245 -38.69311 -36.37426 -34.08676 -33.13147 -31.31712 -26.28211 -24.93372 -22.80822 -20.84881 -19.37039 -18.11125 -17.37855 -16.82524 -15.99643 -15.49018 -14.99493 -14.78361 -14.40642 -13.91557 -13.70636 -13.48776 -13.22371 -13.11161 -12.84806 -12.46639 -11.68727 -11.42424 -11.18339 -10.62079 -10.40824 -10.29088 -9.76165 -9.59081 -8.81583 -8.62004 -8.10434 -6.53724 -3.93930 2.89309 3.20881 3.22103 3.27509 3.30205 3.91761 4.15099 4.19372 4.54888 4.82027 4.94130 5.09699 5.19937 5.33379 5.47551 5.47810 5.85088 6.18872 6.23962 6.95205 7.29403 7.44941 7.92001 8.45247 9.04054 9.38298 9.88619 10.63310 Molecular weight = 220.08amu Principal moments of inertia in cm(-1) A = 0.048442 B = 0.007053 C = 0.006819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.869410 B = 3968.883210 C = 4105.259151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.544 5.544 10 C 0.460 3.540 11 O -0.584 6.584 12 C -0.164 4.164 13 H 0.135 0.865 14 C -0.117 4.117 15 H 0.141 0.859 16 C 0.087 3.913 17 N -0.848 5.848 18 C 0.217 3.783 19 F -0.151 7.151 20 F -0.163 7.163 21 H 0.274 0.726 22 H 0.395 0.605 23 H 0.045 0.955 24 H 0.084 0.916 25 H 0.345 0.655 26 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 -10.821 2.287 11.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.178 5.178 10 C 0.245 3.755 11 O -0.470 6.470 12 C -0.187 4.187 13 H 0.153 0.847 14 C -0.137 4.137 15 H 0.159 0.841 16 C -0.044 4.044 17 N -0.378 5.378 18 C 0.179 3.821 19 F -0.132 7.132 20 F -0.143 7.143 21 H 0.084 0.916 22 H 0.228 0.772 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.157 0.843 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.253 -10.622 1.449 10.723 hybrid contribution -0.431 0.977 0.774 1.319 sum -0.685 -9.645 2.223 9.921 Atomic orbital electron populations 1.69630 1.06057 1.28474 1.49234 1.25347 0.95692 1.00001 0.96731 0.85736 0.79752 0.80658 0.77845 1.19035 1.20547 1.20574 1.19829 0.93575 0.81912 1.47813 0.87500 1.41806 1.09406 1.04409 1.62162 1.18476 0.87492 0.83334 0.86188 1.90536 1.13289 1.86553 1.56620 1.23791 1.02871 0.93979 0.98037 0.84745 1.23583 1.01849 0.93765 0.94517 0.84112 1.21332 0.95747 0.89332 0.97949 1.58627 1.06453 1.08569 1.64197 1.19957 0.83407 0.97973 0.80754 1.93053 1.74315 1.87813 1.57984 1.92972 1.50273 1.77808 1.93260 0.91606 0.77150 0.93645 0.89739 0.84259 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.98 13.05 55.50 0.72 -23.26 15 2 C 0.03 0.66 5.50 -17.46 -0.10 0.57 15 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 15 8 H 0.11 3.09 7.16 -52.49 -0.38 2.72 15 9 N -0.54 -13.87 5.29 -10.97 -0.06 -13.93 15 10 C 0.46 11.00 7.20 -10.98 -0.08 10.92 15 11 O -0.58 -15.86 15.83 5.55 0.09 -15.77 15 12 C -0.16 -2.98 5.89 -91.77 -0.54 -3.52 15 13 H 0.13 2.04 8.14 -51.93 -0.42 1.62 15 14 C -0.12 -1.87 5.45 -90.62 -0.49 -2.36 15 15 H 0.14 2.43 7.66 -51.93 -0.40 2.04 15 16 C 0.09 1.05 7.05 -3.82 -0.03 1.02 15 17 N -0.85 -9.00 9.62 -10.37 -0.10 -9.10 15 18 C 0.22 3.92 5.13 -26.73 -0.14 3.78 15 19 F -0.15 -3.17 17.13 2.25 0.04 -3.13 15 20 F -0.16 -2.72 16.48 2.25 0.04 -2.68 15 21 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 22 H 0.39 9.60 7.90 -40.82 -0.32 9.28 15 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 15 24 H 0.08 1.00 7.06 -51.93 -0.37 0.64 15 25 H 0.34 3.37 8.98 -39.29 -0.35 3.01 15 26 H 0.34 2.75 9.08 -39.29 -0.36 2.40 15 LS Contribution 246.61 15.07 3.72 3.72 Total: -1.00 -30.87 246.61 -4.25 -35.12 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -2.15 Total: 11.44 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.52 Total: 1.91 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.57 Total: -46.28 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.09 Total: -15.77 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.08 Total: -5.81 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.87 -4.25 -35.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715080209.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.414 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds