Wall clock time and date at job start Mon Mar 30 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86789 * 120.00267 * 2 1 4 4 H 1.48500 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47274 * 299.99753 * 3 2 1 6 6 H 1.48506 * 109.47471 * 59.99944 * 3 2 1 7 7 C 1.38954 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99463 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99891 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99950 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99781 * 179.97438 * 10 9 7 13 13 H 1.08999 * 115.56572 * 325.69110 * 12 10 9 14 14 C 1.53005 * 117.49832 * 179.97438 * 12 10 9 15 15 H 1.08997 * 117.51207 * 359.97438 * 14 12 10 16 16 C 1.53000 * 117.49697 * 145.02003 * 14 12 10 17 17 N 1.46901 * 109.46769 * 185.01558 * 16 14 12 18 18 C 1.52998 * 59.99948 * 252.51200 * 14 12 10 19 19 F 1.39906 * 117.49687 * 107.49113 * 18 14 12 20 20 F 1.39905 * 117.49772 * 252.48370 * 18 14 12 21 21 H 0.97006 * 119.99185 * 359.97438 * 1 2 3 22 22 H 0.97005 * 120.00297 * 359.97438 * 9 7 2 23 23 H 1.09002 * 109.47398 * 305.01853 * 16 14 12 24 24 H 1.09001 * 109.47194 * 65.02034 * 16 14 12 25 25 H 1.00898 * 110.99877 * 56.04956 * 17 16 14 26 26 H 1.00908 * 110.99847 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8896 2.3963 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8629 0.0011 13 1 0.3052 -4.8640 0.5557 14 6 2.0655 -6.1534 0.0005 15 1 3.1514 -6.0587 -0.0008 16 6 1.5077 -7.3466 0.7790 17 7 2.4853 -8.4430 0.7612 18 6 1.3177 -5.7221 -1.2627 19 9 2.0800 -5.2361 -2.3304 20 9 0.1766 -6.4494 -1.6179 21 1 -0.4849 0.8402 0.0004 22 1 0.3532 -2.3906 0.0005 23 1 1.3137 -7.0495 1.8096 24 1 0.5791 -7.6804 0.3161 25 1 3.3756 -8.1395 1.1263 26 1 2.1399 -9.2437 1.2689 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715080209.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:28 Heat of formation + Delta-G solvation = -134.422334 kcal Electronic energy + Delta-G solvation = -14899.072576 eV Core-core repulsion = 11841.264852 eV Total energy + Delta-G solvation = -3057.807723 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.77639 -48.45265 -40.50278 -37.80284 -36.04976 -34.27575 -33.33777 -27.96011 -26.34546 -24.45118 -22.12570 -21.13084 -20.07606 -18.95498 -18.17768 -17.57925 -17.15904 -16.53255 -16.11924 -15.80699 -15.45633 -15.21204 -15.11907 -14.78722 -14.64724 -14.26174 -13.96286 -13.59643 -12.98023 -12.63008 -12.50316 -12.15667 -11.93059 -11.61015 -11.14837 -10.57811 -10.13298 -9.63301 -8.55650 -6.05114 1.19645 1.40977 1.52549 1.55394 1.90987 2.22320 2.43068 2.64731 3.13955 3.18055 3.47073 3.61244 3.94237 4.02107 4.25510 4.40657 4.51351 4.59407 5.02885 5.34412 5.87723 6.15661 6.44614 6.60967 7.00096 7.39161 7.92841 8.61544 Molecular weight = 220.08amu Principal moments of inertia in cm(-1) A = 0.048442 B = 0.007053 C = 0.006819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.869410 B = 3968.883210 C = 4105.259151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.009 4.009 3 Si 0.998 3.002 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.266 1.266 7 C -0.339 4.339 8 H 0.084 0.916 9 N -0.554 5.554 10 C 0.458 3.542 11 O -0.623 6.623 12 C -0.168 4.168 13 H 0.170 0.830 14 C -0.091 4.091 15 H 0.126 0.874 16 C 0.094 3.906 17 N -0.856 5.856 18 C 0.206 3.794 19 F -0.174 7.174 20 F -0.152 7.152 21 H 0.281 0.719 22 H 0.399 0.601 23 H 0.067 0.933 24 H 0.093 0.907 25 H 0.349 0.651 26 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.445 -11.424 2.966 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.210 4.210 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.102 0.898 9 N -0.188 5.188 10 C 0.245 3.755 11 O -0.510 6.510 12 C -0.191 4.191 13 H 0.187 0.813 14 C -0.111 4.111 15 H 0.144 0.856 16 C -0.037 4.037 17 N -0.389 5.389 18 C 0.168 3.832 19 F -0.154 7.154 20 F -0.132 7.132 21 H 0.091 0.909 22 H 0.233 0.767 23 H 0.085 0.915 24 H 0.111 0.889 25 H 0.163 0.837 26 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.929 -11.253 2.136 11.492 hybrid contribution -0.234 1.103 0.547 1.253 sum -1.163 -10.150 2.683 10.563 Atomic orbital electron populations 1.69681 1.06972 1.29729 1.48911 1.26148 0.96592 1.02670 0.95542 0.84805 0.78069 0.76555 0.78516 1.19590 1.19567 1.19138 1.19794 0.92952 0.83610 1.50474 0.89815 1.41872 1.09531 1.04588 1.62813 1.19324 0.87396 0.84730 0.84087 1.90503 1.15271 1.87550 1.57705 1.23710 1.04306 0.91759 0.99305 0.81280 1.23678 1.00887 0.93852 0.92671 0.85580 1.21326 0.95925 0.88081 0.98341 1.58576 1.06537 1.08746 1.65022 1.20141 0.84102 0.98498 0.80409 1.93006 1.74999 1.88284 1.59151 1.92992 1.49702 1.77332 1.93177 0.90897 0.76696 0.91490 0.88906 0.83735 0.82400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.60 13.05 21.67 0.28 -48.32 15 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 15 3 Si 1.00 42.19 29.55 68.60 2.03 44.22 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 6 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 7 C -0.34 -19.18 9.68 84.04 0.81 -18.37 15 8 H 0.08 5.03 7.16 -2.91 -0.02 5.01 15 9 N -0.55 -28.67 5.29 -306.99 -1.62 -30.29 15 10 C 0.46 22.11 7.20 87.65 0.63 22.75 15 11 O -0.62 -34.60 15.83 -3.04 -0.05 -34.65 15 12 C -0.17 -5.92 5.89 -11.54 -0.07 -5.99 15 13 H 0.17 4.71 8.14 -2.39 -0.02 4.69 15 14 C -0.09 -2.74 5.45 -10.79 -0.06 -2.80 15 15 H 0.13 4.27 7.66 -2.39 -0.02 4.25 15 16 C 0.09 1.97 7.05 86.30 0.61 2.58 15 17 N -0.86 -15.74 9.62 -186.71 -1.80 -17.54 15 18 C 0.21 7.22 5.13 30.59 0.16 7.38 15 19 F -0.17 -7.32 17.13 44.97 0.77 -6.55 15 20 F -0.15 -4.76 16.48 44.97 0.74 -4.02 15 21 H 0.28 13.89 8.31 -92.70 -0.77 13.12 15 22 H 0.40 19.56 7.90 -92.70 -0.73 18.83 15 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 15 24 H 0.09 1.86 7.06 -2.39 -0.02 1.84 15 25 H 0.35 6.00 8.98 -89.70 -0.81 5.19 15 26 H 0.36 4.63 9.08 -89.69 -0.81 3.81 15 Total: -1.00 -66.64 246.61 1.81 -64.83 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: -1.10 Total: 26.75 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 2.55 Total: 5.56 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -3.14 Total: -96.15 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.05 Total: -34.65 kcal Atomic # 9 Polarization: -12.08 SS G_CDS: 1.51 Total: -10.57 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -66.64 1.81 -64.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715080209.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.592 kcal (2) G-P(sol) polarization free energy of solvation -66.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds