Wall clock time and date at job start Mon Mar 30 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39647 * 120.10065 * 132.27771 * 3 2 1 5 5 C 1.38210 * 119.96766 * 179.97438 * 4 3 2 6 6 F 1.35102 * 119.91047 * 179.97438 * 5 4 3 7 7 C 1.38465 * 120.18237 * 359.97252 * 5 4 3 8 8 C 1.38945 * 120.20900 * 0.02562 * 7 5 4 9 9 N 1.39693 * 119.99042 * 179.97438 * 8 7 5 10 10 C 1.46504 * 119.99682 * 0.02562 * 9 8 7 11 11 C 1.50701 * 109.46986 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00447 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99940 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00040 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00134 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47233 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47339 * 119.99529 * 15 13 11 18 18 H 1.48504 * 109.46788 * 239.99713 * 15 13 11 19 19 C 1.38688 * 120.02714 * 359.97438 * 8 7 5 20 20 H 1.07997 * 120.01816 * 359.97438 * 4 3 2 21 21 H 1.08000 * 119.89561 * 179.74863 * 7 5 4 22 22 H 0.96998 * 120.00277 * 179.97438 * 9 8 7 23 23 H 1.09000 * 109.47045 * 299.99638 * 10 9 8 24 24 H 1.08997 * 109.47773 * 59.99563 * 10 9 8 25 25 H 0.96996 * 120.00130 * 180.02562 * 14 13 11 26 26 H 1.07994 * 120.09135 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2681 0.8137 -0.8939 5 6 4.6502 0.8126 -0.8912 6 9 5.3262 1.5992 -1.7568 7 6 5.3439 0.0074 -0.0036 8 6 4.6550 -0.8045 0.8890 9 7 5.3594 -1.6154 1.7821 10 6 6.8245 -1.6092 1.7777 11 6 7.3339 -2.5624 2.8279 12 1 6.6363 -3.1170 3.4379 13 6 8.6907 -2.7257 3.0108 14 7 9.5404 -2.0500 2.2683 15 14 9.3223 -3.9077 4.3120 16 1 8.1720 -4.5405 5.0060 17 1 10.1503 -4.9581 3.6667 18 1 10.1465 -3.1639 5.2982 19 6 3.2681 -0.8101 0.8938 20 1 2.7297 1.4431 -1.5870 21 1 6.4239 0.0071 -0.0083 22 1 4.8787 -2.1819 2.4056 23 1 7.1862 -1.9206 0.7978 24 1 7.1843 -0.6036 1.9951 25 1 10.4949 -2.1652 2.3966 26 1 2.7316 -1.4404 1.5874 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718637704.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:09 Heat of formation + Delta-G solvation = 0.818516 kcal Electronic energy + Delta-G solvation = -13396.930879 eV Core-core repulsion = 10775.756864 eV Total energy + Delta-G solvation = -2621.174015 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.67394 -39.23450 -36.64531 -35.02982 -32.78201 -30.69885 -29.56735 -26.58993 -24.23034 -22.35921 -21.87254 -18.77938 -17.10609 -16.37728 -16.00514 -15.73620 -15.40226 -14.84088 -14.71832 -13.87585 -13.71735 -13.27436 -13.25265 -13.12295 -12.37919 -12.10484 -11.69072 -11.67240 -11.31540 -11.03958 -10.95073 -10.31020 -9.72958 -9.53146 -8.68860 -8.64647 -6.99368 -6.32724 -4.39039 0.88598 1.56987 2.65241 3.06522 3.15396 3.23631 3.26162 3.72100 3.99765 4.12609 4.30210 4.63445 5.05235 5.20048 5.22186 5.39051 5.61615 5.96357 6.30463 6.32017 6.41827 6.81676 7.03044 7.22564 7.46369 7.46695 7.77564 7.95801 8.38826 8.71097 9.28195 10.77677 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.039164 B = 0.006046 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.771560 B = 4629.983824 C = 5329.611618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.268 3.732 3 C 0.041 3.959 4 C -0.192 4.192 5 C 0.150 3.850 6 F -0.138 7.138 7 C -0.212 4.212 8 C 0.258 3.742 9 N -0.715 5.715 10 C 0.245 3.755 11 C -0.543 4.543 12 H 0.064 0.936 13 C 0.065 3.935 14 N -0.887 5.887 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.174 4.174 20 H 0.133 0.867 21 H 0.145 0.855 22 H 0.398 0.602 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.267 0.733 26 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 3.225 -3.568 8.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.047 4.047 3 C 0.037 3.963 4 C -0.217 4.217 5 C 0.130 3.870 6 F -0.117 7.117 7 C -0.237 4.237 8 C 0.146 3.854 9 N -0.336 5.336 10 C 0.124 3.876 11 C -0.581 4.581 12 H 0.083 0.917 13 C -0.139 4.139 14 N -0.524 5.524 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.201 4.201 20 H 0.151 0.849 21 H 0.163 0.837 22 H 0.232 0.768 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.636 3.245 -3.591 9.899 hybrid contribution 0.935 -0.677 0.747 1.375 sum -7.701 2.567 -2.844 8.601 Atomic orbital electron populations 1.81217 1.12091 1.08570 1.08457 1.25679 0.92589 0.93247 0.93228 1.15230 0.83642 0.99186 0.98223 1.20517 0.92191 1.05122 1.03826 1.17026 0.89092 0.91375 0.89512 1.91496 1.80366 1.72172 1.67625 1.20861 1.01781 1.01586 0.99519 1.17478 0.89973 0.89114 0.88861 1.45671 1.08762 1.43026 1.36123 1.19280 0.72858 0.97689 0.97792 1.21181 0.92178 1.25375 1.19407 0.91743 1.24927 0.96556 0.96028 0.96374 1.69940 1.02751 1.40704 1.39000 0.86336 0.78965 0.80483 0.81036 1.19601 1.20709 1.20714 1.20544 0.92296 1.04254 1.02966 0.84893 0.83701 0.76767 0.95563 0.95564 0.92333 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.43 18.54 41.84 0.78 -5.65 15 2 C 0.27 3.59 15.33 -22.47 -0.34 3.25 15 3 C 0.04 0.54 5.73 -106.97 -0.61 -0.08 15 4 C -0.19 -2.46 9.73 -39.07 -0.38 -2.84 15 5 C 0.15 2.17 7.29 -39.51 -0.29 1.88 15 6 F -0.14 -2.03 17.26 2.25 0.04 -2.00 15 7 C -0.21 -3.42 9.28 -39.24 -0.36 -3.79 15 8 C 0.26 4.12 6.64 -83.85 -0.56 3.56 15 9 N -0.72 -12.95 5.72 -59.85 -0.34 -13.29 15 10 C 0.24 5.56 4.66 -5.19 -0.02 5.54 15 11 C -0.54 -13.60 9.28 -34.44 -0.32 -13.92 15 12 H 0.06 1.55 7.60 -52.49 -0.40 1.15 15 13 C 0.07 1.68 5.46 -17.82 -0.10 1.59 15 14 N -0.89 -24.15 13.29 55.43 0.74 -23.41 15 15 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 15 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 19 C -0.17 -2.35 9.60 -38.94 -0.37 -2.73 15 20 H 0.13 1.44 8.06 -52.49 -0.42 1.02 15 21 H 0.15 2.53 6.71 -52.49 -0.35 2.18 15 22 H 0.40 6.57 8.33 -40.82 -0.34 6.23 15 23 H 0.03 0.64 7.94 -51.93 -0.41 0.23 15 24 H 0.03 0.64 7.95 -51.93 -0.41 0.23 15 25 H 0.27 6.86 8.31 -40.82 -0.34 6.52 15 26 H 0.13 1.54 8.06 -52.49 -0.42 1.12 15 LS Contribution 251.60 15.07 3.79 3.79 Total: -1.00 -26.25 251.60 -5.28 -31.53 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -1.90 Total: 1.74 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -3.36 Total: -7.53 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 1.17 Total: -42.36 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.25 -5.28 -31.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718637704.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.346 kcal (2) G-P(sol) polarization free energy of solvation -26.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds