Wall clock time and date at job start Mon Mar 30 2020 03:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47278 * 91.77565 * 3 2 1 5 5 C 1.37009 * 120.00117 * 97.98912 * 4 3 2 6 6 H 1.08002 * 119.99743 * 156.27971 * 5 4 3 7 7 C 1.38855 * 120.00191 * 336.28173 * 5 4 3 8 8 N 1.31511 * 120.00152 * 350.56461 * 7 5 4 9 9 Si 1.86801 * 120.00259 * 170.56670 * 7 5 4 10 10 H 1.48505 * 109.46812 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47186 * 119.99970 * 9 7 5 12 12 H 1.48498 * 109.47295 * 240.00188 * 9 7 5 13 13 C 1.38140 * 119.99757 * 277.99506 * 4 3 2 14 14 N 1.33146 * 120.04489 * 179.72401 * 13 4 3 15 15 C 1.32126 * 120.08580 * 179.76439 * 14 13 4 16 16 N 1.32176 * 120.17873 * 0.51152 * 15 14 13 17 17 C 1.33113 * 120.09141 * 359.74375 * 16 15 14 18 18 N 1.37997 * 120.04522 * 179.97438 * 17 16 15 19 19 N 1.32863 * 119.91026 * 359.97438 * 17 16 15 20 20 H 1.09005 * 109.46565 * 211.77411 * 3 2 1 21 21 H 1.08994 * 109.47347 * 331.77056 * 3 2 1 22 22 H 0.97004 * 120.00148 * 179.97438 * 8 7 5 23 23 H 1.07998 * 119.91127 * 180.24935 * 15 14 13 24 24 H 0.97001 * 120.00110 * 180.02562 * 18 17 16 25 25 H 0.97001 * 120.00127 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 0.0437 -1.3805 5 6 3.4797 1.2366 -1.9347 6 1 4.1734 1.2493 -2.7624 7 6 2.9764 2.4292 -1.4323 8 7 1.9971 2.4118 -0.5546 9 14 3.6902 4.0584 -2.0029 10 1 4.7739 3.8066 -2.9866 11 1 2.6227 4.8704 -2.6403 12 1 4.2411 4.7933 -0.8361 13 6 3.1703 -1.1186 -2.1235 14 7 3.6088 -1.0797 -3.3801 15 6 3.6842 -2.1915 -4.0899 16 7 3.3154 -3.3447 -3.5596 17 6 2.8711 -3.3910 -2.3057 18 7 2.4859 -4.5954 -1.7532 19 7 2.7991 -2.2760 -1.5868 20 1 2.9709 0.8745 0.5412 21 1 2.9718 -0.9045 0.4861 22 1 1.6458 3.2449 -0.2033 23 1 4.0441 -2.1574 -5.1076 24 1 2.1619 -4.6283 -0.8394 25 1 2.5391 -5.4091 -2.2785 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720110377.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:28 Heat of formation + Delta-G solvation = 117.962125 kcal Electronic energy + Delta-G solvation = -14380.908664 eV Core-core repulsion = 11817.027090 eV Total energy + Delta-G solvation = -2563.881574 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.31367 -37.18406 -34.98446 -34.44423 -32.80686 -31.11323 -30.61747 -27.62162 -25.10214 -23.41885 -21.86455 -18.61851 -17.97392 -17.16349 -16.31279 -15.64976 -15.08214 -14.57079 -14.39210 -13.85305 -13.48598 -12.97383 -12.69570 -12.36489 -11.76053 -11.41186 -11.24460 -11.20944 -10.69332 -10.49830 -10.34346 -10.29608 -9.20489 -8.53026 -8.35342 -8.28013 -7.74013 -6.63065 -4.11530 2.16012 2.36857 3.10123 3.14272 3.19815 3.46035 3.80149 4.01840 4.15691 4.56554 4.69482 4.95723 5.05988 5.42370 5.64270 5.84723 6.27692 6.54755 6.87841 7.31476 7.33983 7.50409 7.61340 8.00772 8.23888 8.47074 8.84658 8.96920 9.10991 9.71419 10.41092 Molecular weight = 220.08amu Principal moments of inertia in cm(-1) A = 0.033359 B = 0.010565 C = 0.008424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.148068 B = 2649.608115 C = 3323.158854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.259 3.741 3 C 0.243 3.757 4 N -0.384 5.384 5 C -0.291 4.291 6 H 0.118 0.882 7 C 0.028 3.972 8 N -0.878 5.878 9 Si 0.943 3.057 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.556 3.444 14 N -0.620 5.620 15 C 0.386 3.614 16 N -0.680 5.680 17 C 0.618 3.382 18 N -0.824 5.824 19 N -0.671 5.671 20 H 0.133 0.867 21 H 0.090 0.910 22 H 0.277 0.723 23 H 0.188 0.812 24 H 0.408 0.592 25 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.735 -5.826 0.024 7.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C -0.059 4.059 3 C 0.116 3.884 4 N -0.081 5.081 5 C -0.420 4.420 6 H 0.135 0.865 7 C -0.177 4.177 8 N -0.515 5.515 9 Si 0.769 3.231 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.204 1.204 13 C 0.197 3.803 14 N -0.354 5.354 15 C 0.086 3.914 16 N -0.422 5.422 17 C 0.250 3.750 18 N -0.374 5.374 19 N -0.415 5.415 20 H 0.150 0.850 21 H 0.107 0.893 22 H 0.087 0.913 23 H 0.204 0.796 24 H 0.238 0.762 25 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.937 -5.285 0.338 6.056 hybrid contribution 0.413 0.526 -0.162 0.688 sum 3.350 -4.759 0.177 5.823 Atomic orbital electron populations 1.80857 1.13708 1.13231 1.08409 1.29128 0.95199 0.89182 0.92382 1.18707 0.81639 1.03702 0.84364 1.42176 1.54255 1.03118 1.08574 1.20023 1.24051 0.80188 1.17729 0.86488 1.25519 0.95021 1.00432 0.96757 1.69853 1.23110 1.29043 1.29478 0.85584 0.78855 0.80011 0.78689 1.18819 1.20647 1.20370 1.19085 0.89983 0.85961 0.85251 1.68526 1.28044 1.31539 1.07331 1.24495 0.86596 0.81961 0.98348 1.68415 1.29648 1.31133 1.12966 1.18935 0.84603 0.85962 0.85524 1.41508 1.73019 1.05341 1.17563 1.67834 1.35074 0.98299 1.40281 0.84950 0.89268 0.91262 0.79575 0.76216 0.76205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.27 18.54 42.15 0.78 -11.49 15 2 C 0.26 6.19 13.65 -20.76 -0.28 5.91 15 3 C 0.24 5.23 5.03 -6.83 -0.03 5.20 15 4 N -0.38 -9.18 2.69 -120.00 -0.32 -9.51 15 5 C -0.29 -7.13 9.29 -15.01 -0.14 -7.27 15 6 H 0.12 2.90 7.37 -52.49 -0.39 2.52 15 7 C 0.03 0.66 5.11 -17.46 -0.09 0.57 15 8 N -0.88 -21.69 9.16 55.49 0.51 -21.18 15 9 Si 0.94 18.92 29.56 -169.99 -5.03 13.89 15 10 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 11 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 12 H -0.28 -5.45 7.11 56.52 0.40 -5.05 15 13 C 0.56 13.16 8.07 -321.86 -2.60 10.56 15 14 N -0.62 -14.09 9.39 -15.33 -0.14 -14.24 15 15 C 0.39 7.47 12.40 -91.54 -1.13 6.33 15 16 N -0.68 -13.18 10.53 -15.37 -0.16 -13.34 15 17 C 0.62 12.05 8.76 -322.12 -2.82 9.23 15 18 N -0.82 -11.74 9.05 29.86 0.27 -11.47 15 19 N -0.67 -14.65 9.44 -14.70 -0.14 -14.78 15 20 H 0.13 2.81 6.37 -51.93 -0.33 2.48 15 21 H 0.09 1.69 7.64 -51.93 -0.40 1.29 15 22 H 0.28 6.60 8.31 -40.82 -0.34 6.26 15 23 H 0.19 2.76 8.06 -52.49 -0.42 2.34 15 24 H 0.41 5.12 8.95 -40.82 -0.37 4.75 15 25 H 0.41 4.73 8.95 -40.82 -0.37 4.36 15 LS Contribution 237.64 15.07 3.58 3.58 Total: -1.00 -30.15 237.64 -9.15 -39.30 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -1.40 Total: 8.71 kcal Atomic # 6 Polarization: 37.63 SS G_CDS: -7.10 Total: 30.53 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: 0.79 Total: -96.01 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.15 -9.15 -39.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720110377.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.265 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds