Wall clock time and date at job start Mon Mar 30 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38256 * 119.99813 * 2 1 4 4 C 1.38209 * 119.99781 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00103 * 359.75203 * 4 3 2 6 6 C 1.38209 * 120.00125 * 0.50424 * 5 4 3 7 7 C 1.50700 * 120.00276 * 179.76701 * 6 5 4 8 8 H 1.09004 * 109.47115 * 179.72506 * 7 6 5 9 9 C 1.50693 * 109.47222 * 299.72498 * 7 6 5 10 10 H 1.08008 * 119.99967 * 0.02562 * 9 7 6 11 11 C 1.37879 * 120.00326 * 179.97438 * 9 7 6 12 12 N 1.31509 * 119.99509 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 120.00054 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47219 * 60.00306 * 13 11 9 15 15 H 1.48501 * 109.46949 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47367 * 300.00049 * 13 11 9 17 17 C 1.50697 * 109.47039 * 59.72954 * 7 6 5 18 18 O 1.20833 * 119.99747 * 240.00287 * 17 7 6 19 19 O 1.34230 * 120.00262 * 59.71909 * 17 7 6 20 20 C 1.38215 * 119.99992 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.46832 * 270.01560 * 1 2 3 22 22 H 1.08995 * 109.47215 * 30.02468 * 1 2 3 23 23 H 1.09007 * 109.47166 * 150.01781 * 1 2 3 24 24 H 1.07997 * 120.00179 * 0.02562 * 3 2 1 25 25 H 1.08005 * 119.99843 * 180.02562 * 4 3 2 26 26 H 1.08007 * 119.99846 * 180.27316 * 5 4 3 27 27 H 0.97004 * 120.00052 * 179.97438 * 12 11 9 28 28 H 0.96699 * 116.99771 * 180.27188 * 19 17 7 29 29 H 1.07997 * 119.99794 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1973 0.0005 5 6 4.2716 0.0000 0.0063 6 6 3.5807 -1.1969 0.0009 7 6 4.3342 -2.5020 0.0018 8 1 3.6259 -3.3306 0.0020 9 6 5.2010 -2.5825 -1.2282 10 1 5.2061 -1.7696 -1.9394 11 6 5.9884 -3.6933 -1.4454 12 7 5.9825 -4.6828 -0.5792 13 14 7.0633 -3.7927 -2.9698 14 1 8.0280 -2.6637 -2.9697 15 1 7.8057 -5.0788 -2.9690 16 1 6.2104 -3.7149 -4.1829 17 6 5.2001 -2.5812 1.2327 18 8 6.3983 -2.6916 1.1223 19 8 4.6409 -2.5235 2.4516 20 6 2.1981 -1.1970 0.0005 21 1 -0.3633 0.0003 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3634 -0.8902 -0.5136 24 1 1.6583 2.1326 0.0004 25 1 4.1203 2.1327 0.0010 26 1 5.3517 0.0001 0.0111 27 1 6.5362 -5.4646 -0.7321 28 1 5.2373 -2.5742 3.2110 29 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821976681.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:57 Heat of formation + Delta-G solvation = -80.319457 kcal Electronic energy + Delta-G solvation = -14646.954919 eV Core-core repulsion = 12113.430051 eV Total energy + Delta-G solvation = -2533.524868 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.24456 -38.21144 -34.83025 -33.56718 -32.16323 -31.16874 -27.75933 -26.30445 -24.10360 -21.68443 -21.11564 -19.39779 -16.60390 -16.46215 -15.94678 -15.16055 -14.86959 -14.30352 -14.05963 -13.66290 -13.40086 -12.59193 -12.47306 -12.18438 -11.97773 -11.55349 -11.41946 -11.04053 -10.82607 -10.52855 -10.46240 -10.12105 -9.74530 -9.58878 -8.94008 -8.49869 -8.15300 -7.87971 -6.15514 -4.21439 1.98432 2.03478 3.31725 3.35985 3.38973 3.88127 4.30109 4.35292 4.65667 5.28563 5.35000 5.38351 5.56618 5.68003 5.83793 5.90598 6.07209 6.16136 6.25841 6.60155 6.67263 6.93314 7.00966 7.08707 7.14373 7.52477 7.64169 7.76233 7.82606 8.06553 8.79087 9.44459 9.52137 10.95523 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.030526 B = 0.009657 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.018466 B = 2898.635901 C = 3233.358301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.095 4.095 3 C -0.141 4.141 4 C -0.122 4.122 5 C -0.114 4.114 6 C -0.031 4.031 7 C 0.097 3.903 8 H 0.068 0.932 9 C -0.519 4.519 10 H 0.069 0.931 11 C 0.082 3.918 12 N -0.870 5.870 13 Si 0.905 3.095 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.477 3.523 18 O -0.492 6.492 19 O -0.543 6.543 20 C -0.117 4.117 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.120 0.880 27 H 0.266 0.734 28 H 0.379 0.621 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.366 7.366 2.264 10.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.159 4.159 4 C -0.140 4.140 5 C -0.132 4.132 6 C -0.031 4.031 7 C 0.077 3.923 8 H 0.085 0.915 9 C -0.555 4.555 10 H 0.087 0.913 11 C -0.125 4.125 12 N -0.505 5.505 13 Si 0.733 3.267 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.200 1.200 17 C 0.318 3.682 18 O -0.376 6.376 19 O -0.355 6.355 20 C -0.135 4.135 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.129 0.871 25 H 0.131 0.869 26 H 0.138 0.862 27 H 0.075 0.925 28 H 0.235 0.765 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.200 7.161 1.908 10.333 hybrid contribution 1.183 -0.261 -0.199 1.227 sum -6.018 6.900 1.709 9.314 Atomic orbital electron populations 1.20723 0.91932 1.02151 1.01700 1.19782 0.95428 0.93326 1.01012 1.20791 0.94181 0.96849 1.04127 1.21018 0.94179 0.97605 1.01209 1.21083 1.00212 0.91864 1.00068 1.20030 0.93158 0.95525 0.94414 1.17764 0.93997 0.91486 0.89023 0.91468 1.20677 1.26292 1.04365 1.04208 0.91313 1.24947 0.95917 0.95106 0.96508 1.69871 1.38623 1.07104 1.34925 0.86442 0.80460 0.77466 0.82380 1.19934 1.21196 1.20038 1.24917 0.89195 0.71032 0.83090 1.90519 1.17253 1.43442 1.86346 1.84715 1.46302 1.86944 1.17493 1.20947 0.93732 0.97170 1.01612 0.91748 0.92189 0.91805 0.87140 0.86930 0.86219 0.92457 0.76535 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 36.01 0.36 -0.98 15 2 C -0.10 -1.55 5.88 -104.62 -0.62 -2.17 15 3 C -0.14 -2.23 9.70 -39.59 -0.38 -2.61 15 4 C -0.12 -2.08 10.05 -39.58 -0.40 -2.48 15 5 C -0.11 -2.32 8.82 -39.58 -0.35 -2.67 15 6 C -0.03 -0.67 4.66 -104.62 -0.49 -1.16 15 7 C 0.10 2.43 2.40 -94.08 -0.23 2.20 15 8 H 0.07 1.75 7.88 -51.93 -0.41 1.34 15 9 C -0.52 -14.25 7.87 -34.44 -0.27 -14.52 15 10 H 0.07 1.86 7.61 -52.48 -0.40 1.46 15 11 C 0.08 2.28 4.72 -17.82 -0.08 2.20 15 12 N -0.87 -25.44 11.66 55.43 0.65 -24.80 15 13 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 15 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 17 C 0.48 12.14 6.59 36.00 0.24 12.38 15 18 O -0.49 -14.03 15.16 -18.76 -0.28 -14.31 15 19 O -0.54 -11.58 13.34 -39.26 -0.52 -12.11 15 20 C -0.12 -2.21 9.33 -39.58 -0.37 -2.58 15 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 22 H 0.06 0.64 8.09 -51.93 -0.42 0.22 15 23 H 0.06 0.74 8.09 -51.92 -0.42 0.32 15 24 H 0.11 1.42 8.06 -52.49 -0.42 0.99 15 25 H 0.11 1.61 8.06 -52.48 -0.42 1.18 15 26 H 0.12 2.55 8.05 -52.48 -0.42 2.13 15 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 28 H 0.38 6.32 9.10 45.56 0.41 6.74 15 29 H 0.12 2.09 7.95 -52.49 -0.42 1.67 15 LS Contribution 260.35 15.07 3.92 3.92 Total: -1.00 -31.73 260.35 -6.32 -38.05 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -2.48 Total: 4.90 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.59 Total: -12.38 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.65 Total: -24.80 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.81 Total: -26.42 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.73 -6.32 -38.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821976681.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.267 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds