Wall clock time and date at job start Mon Mar 30 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38256 * 119.99813 * 2 1 4 4 C 1.38209 * 119.99781 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00103 * 359.75203 * 4 3 2 6 6 C 1.38209 * 120.00125 * 0.50424 * 5 4 3 7 7 C 1.50700 * 120.00276 * 179.76701 * 6 5 4 8 8 H 1.09004 * 109.47115 * 179.72506 * 7 6 5 9 9 C 1.50693 * 109.47222 * 299.72498 * 7 6 5 10 10 H 1.08008 * 119.99967 * 0.02562 * 9 7 6 11 11 C 1.37879 * 120.00326 * 179.97438 * 9 7 6 12 12 N 1.31509 * 119.99509 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 120.00054 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47219 * 60.00306 * 13 11 9 15 15 H 1.48501 * 109.46949 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47367 * 300.00049 * 13 11 9 17 17 C 1.50697 * 109.47039 * 59.72954 * 7 6 5 18 18 O 1.20833 * 119.99747 * 240.00287 * 17 7 6 19 19 O 1.34230 * 120.00262 * 59.71909 * 17 7 6 20 20 C 1.38215 * 119.99992 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.46832 * 270.01560 * 1 2 3 22 22 H 1.08995 * 109.47215 * 30.02468 * 1 2 3 23 23 H 1.09007 * 109.47166 * 150.01781 * 1 2 3 24 24 H 1.07997 * 120.00179 * 0.02562 * 3 2 1 25 25 H 1.08005 * 119.99843 * 180.02562 * 4 3 2 26 26 H 1.08007 * 119.99846 * 180.27316 * 5 4 3 27 27 H 0.97004 * 120.00052 * 179.97438 * 12 11 9 28 28 H 0.96699 * 116.99771 * 180.27188 * 19 17 7 29 29 H 1.07997 * 119.99794 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1973 0.0005 5 6 4.2716 0.0000 0.0063 6 6 3.5807 -1.1969 0.0009 7 6 4.3342 -2.5020 0.0018 8 1 3.6259 -3.3306 0.0020 9 6 5.2010 -2.5825 -1.2282 10 1 5.2061 -1.7696 -1.9394 11 6 5.9884 -3.6933 -1.4454 12 7 5.9825 -4.6828 -0.5792 13 14 7.0633 -3.7927 -2.9698 14 1 8.0280 -2.6637 -2.9697 15 1 7.8057 -5.0788 -2.9690 16 1 6.2104 -3.7149 -4.1829 17 6 5.2001 -2.5812 1.2327 18 8 6.3983 -2.6916 1.1223 19 8 4.6409 -2.5235 2.4516 20 6 2.1981 -1.1970 0.0005 21 1 -0.3633 0.0003 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3634 -0.8902 -0.5136 24 1 1.6583 2.1326 0.0004 25 1 4.1203 2.1327 0.0010 26 1 5.3517 0.0001 0.0111 27 1 6.5362 -5.4646 -0.7321 28 1 5.2373 -2.5742 3.2110 29 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821976681.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:57 Heat of formation + Delta-G solvation = -100.281392 kcal Electronic energy + Delta-G solvation = -14647.820533 eV Core-core repulsion = 12113.430051 eV Total energy + Delta-G solvation = -2534.390482 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.01098 -39.83063 -36.75305 -35.43355 -33.78158 -32.70911 -29.47131 -27.52938 -26.14938 -23.23059 -22.66439 -21.08315 -18.55463 -18.53198 -17.44854 -16.94796 -16.58747 -16.14572 -15.66384 -15.20191 -14.64148 -14.33166 -13.90161 -13.82781 -13.53295 -13.00602 -12.88975 -12.71989 -12.60584 -12.27501 -12.11275 -11.92648 -11.57659 -11.48332 -10.92572 -10.61850 -9.56219 -9.33256 -8.26422 -6.38333 0.58498 0.61946 1.38249 1.42546 1.48961 1.87225 2.37073 2.61135 3.05713 3.30675 4.07009 4.09842 4.18806 4.38970 4.62946 4.70094 4.90548 4.95052 4.96180 5.07626 5.18731 5.27713 5.43784 5.60984 5.68919 5.79702 5.89514 5.99764 6.05579 6.29262 6.65977 7.32922 7.58393 8.83807 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.030526 B = 0.009657 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.018466 B = 2898.635901 C = 3233.358301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.089 4.089 3 C -0.133 4.133 4 C -0.117 4.117 5 C -0.139 4.139 6 C -0.059 4.059 7 C 0.092 3.908 8 H 0.048 0.952 9 C -0.531 4.531 10 H 0.064 0.936 11 C 0.030 3.970 12 N -0.904 5.904 13 Si 0.964 3.036 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.260 1.260 17 C 0.482 3.518 18 O -0.531 6.531 19 O -0.531 6.531 20 C -0.132 4.132 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.067 0.933 24 H 0.153 0.847 25 H 0.142 0.858 26 H 0.096 0.904 27 H 0.264 0.736 28 H 0.403 0.597 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 9.336 1.979 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.089 4.089 3 C -0.150 4.150 4 C -0.134 4.134 5 C -0.157 4.157 6 C -0.059 4.059 7 C 0.073 3.927 8 H 0.066 0.934 9 C -0.567 4.567 10 H 0.082 0.918 11 C -0.172 4.172 12 N -0.540 5.540 13 Si 0.788 3.212 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.184 1.184 17 C 0.325 3.675 18 O -0.418 6.418 19 O -0.344 6.344 20 C -0.150 4.150 21 H 0.099 0.901 22 H 0.103 0.897 23 H 0.086 0.914 24 H 0.170 0.830 25 H 0.160 0.840 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.261 0.739 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.899 9.141 1.642 12.862 hybrid contribution 1.594 -0.782 -0.010 1.776 sum -7.304 8.359 1.632 11.220 Atomic orbital electron populations 1.20805 0.88733 1.03629 1.03159 1.20247 0.97711 0.92341 0.98630 1.21288 0.93684 0.98351 1.01712 1.21331 0.95163 0.97295 0.99659 1.21001 0.99268 0.93045 1.02393 1.19837 0.94283 0.94140 0.97636 1.17639 0.93565 0.93094 0.88434 0.93396 1.20963 1.26535 1.04080 1.05140 0.91794 1.25770 0.97216 0.94865 0.99352 1.69982 1.39669 1.07618 1.36724 0.85524 0.78843 0.77308 0.79489 1.20061 1.20772 1.18414 1.24854 0.88574 0.69917 0.84188 1.90490 1.18714 1.45448 1.87137 1.84620 1.46356 1.86164 1.17273 1.21078 0.92733 0.98807 1.02388 0.90131 0.89740 0.91412 0.82969 0.83996 0.88610 0.92723 0.73892 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 10.01 71.24 0.71 -1.47 15 2 C -0.09 -2.63 5.88 -19.87 -0.12 -2.75 15 3 C -0.13 -3.64 9.70 22.27 0.22 -3.42 15 4 C -0.12 -3.69 10.05 22.27 0.22 -3.46 15 5 C -0.14 -5.67 8.82 22.27 0.20 -5.48 15 6 C -0.06 -2.58 4.66 -19.87 -0.09 -2.68 15 7 C 0.09 4.80 2.40 -13.04 -0.03 4.77 15 8 H 0.05 2.63 7.88 -2.38 -0.02 2.62 15 9 C -0.53 -30.09 7.87 25.60 0.20 -29.89 15 10 H 0.06 3.57 7.61 -2.91 -0.02 3.55 15 11 C 0.03 1.75 4.72 84.66 0.40 2.15 15 12 N -0.90 -54.43 11.66 21.45 0.25 -54.18 15 13 Si 0.96 45.34 29.54 68.60 2.03 47.37 15 14 H -0.28 -12.88 7.11 99.48 0.71 -12.18 15 15 H -0.28 -12.97 7.11 99.48 0.71 -12.27 15 16 H -0.26 -11.45 7.11 99.48 0.71 -10.75 15 17 C 0.48 25.27 6.59 71.23 0.47 25.74 15 18 O -0.53 -31.29 15.16 21.94 0.33 -30.96 15 19 O -0.53 -22.79 13.34 -51.41 -0.69 -23.47 15 20 C -0.13 -4.91 9.33 22.27 0.21 -4.70 15 21 H 0.08 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.08 1.35 8.09 -2.39 -0.02 1.33 15 23 H 0.07 1.35 8.09 -2.38 -0.02 1.33 15 24 H 0.15 2.96 8.06 -2.91 -0.02 2.93 15 25 H 0.14 3.57 8.06 -2.91 -0.02 3.55 15 26 H 0.10 4.26 8.05 -2.91 -0.02 4.24 15 27 H 0.26 15.22 8.31 -92.71 -0.77 14.45 15 28 H 0.40 13.24 9.10 -74.06 -0.67 12.56 15 29 H 0.12 4.25 7.95 -2.91 -0.02 4.23 15 Total: -1.00 -70.20 260.35 4.79 -65.41 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.48 Total: 17.03 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 2.39 Total: -21.19 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.25 Total: -54.18 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -0.35 Total: -54.43 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -70.20 4.79 -65.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821976681.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.874 kcal (2) G-P(sol) polarization free energy of solvation -70.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds