Wall clock time and date at job start Mon Mar 30 2020 03:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38249 * 120.00141 * 2 1 4 4 C 1.38219 * 120.00030 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99846 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.99892 * 359.82065 * 5 4 3 7 7 C 1.38217 * 119.99531 * 180.02562 * 2 1 3 8 8 C 1.50698 * 120.00344 * 359.97438 * 7 2 1 9 9 H 1.09001 * 109.46932 * 5.74237 * 8 7 2 10 10 C 1.50704 * 109.47277 * 125.74224 * 8 7 2 11 11 H 1.08002 * 119.99720 * 0.02562 * 10 8 7 12 12 C 1.37875 * 119.99872 * 179.97438 * 10 8 7 13 13 N 1.31520 * 119.99963 * 0.02562 * 12 10 8 14 14 Si 1.86790 * 119.99841 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47040 * 90.00390 * 14 12 10 16 16 H 1.48501 * 109.47409 * 210.00413 * 14 12 10 17 17 H 1.48498 * 109.47650 * 330.00435 * 14 12 10 18 18 C 1.50701 * 109.47027 * 245.74559 * 8 7 2 19 19 O 1.20830 * 119.99820 * 359.97438 * 18 8 7 20 20 O 1.34227 * 119.99895 * 180.02562 * 18 8 7 21 21 H 1.08999 * 109.46638 * 263.98318 * 1 2 3 22 22 H 1.08994 * 109.47094 * 23.97497 * 1 2 3 23 23 H 1.08998 * 109.47332 * 143.97978 * 1 2 3 24 24 H 1.07995 * 120.00183 * 359.97438 * 3 2 1 25 25 H 1.07996 * 120.00353 * 180.02562 * 4 3 2 26 26 H 1.07997 * 119.99764 * 180.02562 * 5 4 3 27 27 H 1.08004 * 119.99713 * 180.23136 * 6 5 4 28 28 H 0.96996 * 119.99449 * 179.97438 * 13 12 10 29 29 H 0.96706 * 116.99697 * 180.02562 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 3.5806 -1.1971 0.0059 7 6 2.1980 -1.1971 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.3773 -2.3054 -0.1029 10 6 1.9116 -3.3519 -1.1541 11 1 2.6779 -2.9839 -1.8204 12 6 1.3615 -4.5996 -1.3583 13 7 0.4288 -5.0479 -0.5466 14 14 1.9400 -5.6526 -2.7886 15 1 3.0785 -6.4997 -2.3509 16 1 0.8253 -6.5199 -3.2474 17 1 2.3762 -4.7754 -3.9046 18 6 1.6993 -3.2293 1.2946 19 8 2.4193 -2.7383 2.1316 20 8 1.1272 -4.4228 1.5180 21 1 -0.3632 -0.1077 1.0220 22 1 -0.3633 0.9389 -0.4176 23 1 -0.3634 -0.8312 -0.6043 24 1 1.6584 2.1325 -0.0004 25 1 4.1206 2.1325 0.0010 26 1 5.3517 -0.0002 0.0024 27 1 4.1206 -2.1324 0.0105 28 1 0.0416 -5.9255 -0.6906 29 1 1.3200 -4.8507 2.3635 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821976879.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:01 Heat of formation + Delta-G solvation = -84.362314 kcal Electronic energy + Delta-G solvation = -14932.787375 eV Core-core repulsion = 12399.087196 eV Total energy + Delta-G solvation = -2533.700179 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.10485 -39.73764 -36.47021 -35.55039 -33.73869 -32.73956 -29.45105 -27.53713 -25.95760 -23.48765 -22.33880 -20.92487 -18.90801 -18.34915 -17.20754 -16.96938 -16.52091 -15.97277 -15.67308 -15.34978 -14.45417 -14.19462 -13.96495 -13.77735 -13.34327 -12.97271 -12.85744 -12.79910 -12.60458 -12.26054 -11.97446 -11.87443 -11.48909 -11.31193 -11.19937 -10.41594 -9.50460 -9.31618 -8.11313 -6.34222 0.61602 0.67902 1.42984 1.44780 1.54198 1.80059 2.41734 2.81364 3.15088 3.23110 4.10311 4.12937 4.30523 4.34409 4.57992 4.70449 4.82380 4.93784 4.95118 5.05732 5.23197 5.37350 5.43412 5.70241 5.72101 5.77508 5.87464 6.04538 6.13105 6.34034 6.66845 7.32932 7.63861 8.86566 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029459 B = 0.010805 C = 0.009922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.230043 B = 2590.837779 C = 2821.369505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.126 4.126 4 C -0.128 4.128 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.067 4.067 8 C 0.080 3.920 9 H 0.063 0.937 10 C -0.544 4.544 11 H 0.059 0.941 12 C 0.022 3.978 13 N -0.848 5.848 14 Si 0.958 3.042 15 H -0.280 1.280 16 H -0.275 1.275 17 H -0.270 1.270 18 C 0.484 3.516 19 O -0.593 6.593 20 O -0.453 6.453 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.058 0.942 24 H 0.150 0.850 25 H 0.153 0.847 26 H 0.137 0.863 27 H 0.093 0.907 28 H 0.268 0.732 29 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 7.632 0.014 7.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.144 4.144 4 C -0.145 4.145 5 C -0.156 4.156 6 C -0.128 4.128 7 C -0.067 4.067 8 C 0.061 3.939 9 H 0.080 0.920 10 C -0.580 4.580 11 H 0.078 0.922 12 C -0.183 4.183 13 N -0.483 5.483 14 Si 0.783 3.217 15 H -0.206 1.206 16 H -0.200 1.200 17 H -0.195 1.195 18 C 0.331 3.669 19 O -0.489 6.489 20 O -0.257 6.257 21 H 0.083 0.917 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.168 0.832 25 H 0.171 0.829 26 H 0.155 0.845 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.181 7.770 -0.117 7.860 hybrid contribution 0.484 -1.445 0.101 1.527 sum 1.665 6.325 -0.016 6.540 Atomic orbital electron populations 1.20818 0.90522 1.03352 1.02077 1.20103 0.97135 0.92714 1.00749 1.21277 0.94736 0.97234 1.01113 1.21389 0.94376 0.98289 1.00487 1.21329 1.00546 0.92223 1.01550 1.20940 0.94118 0.98083 0.99647 1.19756 0.94258 0.94255 0.98456 1.17654 0.97971 0.89246 0.89015 0.91982 1.21021 1.23819 1.01952 1.11235 0.92250 1.25767 0.95233 0.98684 0.98644 1.70004 1.24486 1.18825 1.34978 0.85553 0.78009 0.78525 0.79605 1.20576 1.20040 1.19455 1.25259 0.74637 0.79003 0.88047 1.90503 1.40286 1.69372 1.48724 1.85537 1.67060 1.32621 1.40493 0.91675 0.89002 0.92347 0.83200 0.82920 0.84507 0.88922 0.92271 0.77549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.72 9.27 71.24 0.66 -3.05 15 2 C -0.11 -4.14 5.88 -19.87 -0.12 -4.25 15 3 C -0.13 -3.96 9.68 22.27 0.22 -3.75 15 4 C -0.13 -3.85 10.05 22.27 0.22 -3.62 15 5 C -0.14 -4.88 10.05 22.27 0.22 -4.65 15 6 C -0.11 -4.85 8.06 22.27 0.18 -4.67 15 7 C -0.07 -3.09 4.29 -19.87 -0.09 -3.18 15 8 C 0.08 4.11 2.24 -13.03 -0.03 4.08 15 9 H 0.06 3.26 5.55 -2.39 -0.01 3.25 15 10 C -0.54 -29.41 8.09 25.60 0.21 -29.20 15 11 H 0.06 3.24 7.44 -2.91 -0.02 3.22 15 12 C 0.02 1.17 5.23 84.65 0.44 1.61 15 13 N -0.85 -45.48 10.00 21.45 0.21 -45.27 15 14 Si 0.96 41.92 29.54 68.60 2.03 43.95 15 15 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 16 H -0.28 -11.59 7.11 99.48 0.71 -10.88 15 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 18 C 0.48 25.21 7.48 71.24 0.53 25.75 15 19 O -0.59 -31.94 16.15 21.95 0.35 -31.59 15 20 O -0.45 -22.23 9.85 -51.39 -0.51 -22.74 15 21 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.09 2.36 8.04 -2.39 -0.02 2.34 15 23 H 0.06 2.17 6.34 -2.39 -0.02 2.15 15 24 H 0.15 3.52 8.06 -2.91 -0.02 3.50 15 25 H 0.15 3.30 8.06 -2.91 -0.02 3.27 15 26 H 0.14 3.96 8.06 -2.91 -0.02 3.93 15 27 H 0.09 4.41 7.91 -2.91 -0.02 4.39 15 28 H 0.27 13.58 8.31 -92.71 -0.77 12.80 15 29 H 0.37 14.49 9.10 -74.05 -0.67 13.82 15 Total: -1.00 -64.16 252.19 5.04 -59.12 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.49 Total: 21.48 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 2.45 Total: -24.95 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.21 Total: -45.27 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -0.15 Total: -54.33 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -64.16 5.04 -59.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821976879.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.241 kcal (2) G-P(sol) polarization free energy of solvation -64.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds