Wall clock time and date at job start Mon Mar 30 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48491 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46948 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.46809 * 60.00013 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 O 1.42898 * 109.46964 * 300.00198 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.38763 * 120.11685 * 85.00056 * 12 9 7 14 14 N 1.31565 * 121.35538 * 179.97438 * 13 12 9 15 15 C 1.32555 * 121.42916 * 359.97438 * 14 13 12 16 16 N 1.37279 * 133.72283 * 179.97438 * 15 14 13 17 17 H 0.97000 * 126.62741 * 0.06454 * 16 15 14 18 18 N 1.40220 * 106.73766 * 180.02562 * 16 15 14 19 19 N 1.28681 * 109.47745 * 0.02562 * 18 16 15 20 20 C 1.35222 * 110.06702 * 0.02562 * 19 18 16 21 21 C 1.36956 * 120.11660 * 264.72692 * 12 9 7 22 22 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 23 23 H 0.96698 * 113.99898 * 299.99550 * 11 9 7 24 24 H 1.07998 * 119.32211 * 359.97438 * 13 12 9 25 25 H 1.08000 * 120.84630 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 8 0.4299 -2.5750 1.1665 12 6 2.2303 -3.6447 -0.0005 13 6 2.7622 -4.1059 1.1952 14 7 3.6184 -5.1044 1.2236 15 6 4.0086 -5.7122 0.1120 16 7 4.8665 -6.7513 -0.1502 17 1 5.3756 -7.2597 0.5004 18 7 4.8637 -6.9363 -1.5401 19 7 4.0710 -6.0817 -2.0851 20 6 3.5114 -5.2972 -1.1365 21 6 2.5940 -4.2377 -1.1802 22 1 -0.4849 0.8401 0.0004 23 1 0.9223 -2.5299 1.9975 24 1 2.4673 -3.6356 2.1216 25 1 2.1871 -3.8960 -2.1204 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535657156.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:17 Heat of formation + Delta-G solvation = 70.371255 kcal Electronic energy + Delta-G solvation = -14157.888808 eV Core-core repulsion = 11559.650788 eV Total energy + Delta-G solvation = -2598.238020 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.00866 -38.66832 -35.76519 -33.60969 -32.33494 -31.46227 -30.19242 -26.82606 -24.53119 -23.69167 -22.46835 -21.12999 -18.34269 -17.49572 -17.22999 -16.24593 -15.74393 -15.11752 -14.75087 -13.58817 -13.07939 -12.92969 -12.75432 -12.51283 -12.19260 -11.81810 -11.48101 -11.32766 -11.03255 -10.90569 -10.29084 -9.82531 -9.15631 -8.96298 -8.84141 -8.57371 -8.17812 -6.17867 -4.38746 0.52815 1.53328 2.27389 2.37617 3.19259 3.28625 3.32020 3.95163 4.17618 4.29843 4.56719 4.69458 5.09534 5.13867 5.29181 5.80393 5.82243 6.06377 6.14603 6.49415 6.72749 6.95896 7.42126 7.65934 7.85785 7.89837 8.05504 8.63425 9.10375 9.38052 10.85319 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.046245 B = 0.007562 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.328632 B = 3701.749720 C = 3860.251039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.083 3.917 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.571 4.571 8 H 0.060 0.940 9 C 0.268 3.732 10 H 0.076 0.924 11 O -0.556 6.556 12 C -0.136 4.136 13 C 0.193 3.807 14 N -0.498 5.498 15 C 0.260 3.740 16 N -0.492 5.492 17 H 0.447 0.553 18 N -0.006 5.006 19 N -0.206 5.206 20 C -0.062 4.062 21 C 0.003 3.997 22 H 0.264 0.736 23 H 0.347 0.653 24 H 0.173 0.827 25 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.634 -7.637 1.722 9.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.124 4.124 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.609 4.609 8 H 0.078 0.922 9 C 0.210 3.790 10 H 0.094 0.906 11 O -0.359 6.359 12 C -0.142 4.142 13 C 0.022 3.978 14 N -0.212 5.212 15 C 0.017 3.983 16 N -0.220 5.220 17 H 0.293 0.707 18 N 0.012 4.988 19 N -0.087 5.087 20 C -0.188 4.188 21 C -0.027 4.027 22 H 0.074 0.926 23 H 0.192 0.808 24 H 0.190 0.810 25 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.909 -8.732 0.788 10.572 hybrid contribution 0.710 1.457 0.833 1.822 sum 6.618 -7.275 1.621 9.968 Atomic orbital electron populations 1.70071 1.05951 1.26867 1.46034 1.25024 0.94742 0.99249 0.93414 0.86533 0.80219 0.83341 0.77875 1.19620 1.20706 1.20695 1.21522 0.93282 0.90244 1.55808 0.92203 1.18476 0.86338 0.87004 0.87216 0.90615 1.86671 1.37876 1.96123 1.15275 1.22076 1.00504 0.99165 0.92461 1.22780 0.87656 0.88224 0.99102 1.66785 1.15849 1.10968 1.27628 1.19454 0.94528 0.92196 0.92126 1.47347 1.37910 1.28438 1.08258 0.70665 1.81570 1.15529 1.16824 0.84914 1.74708 1.05163 1.02303 1.26505 1.20537 1.05566 1.02723 0.89998 1.20527 0.92113 0.89979 1.00103 0.92650 0.80814 0.80989 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.30 12.84 55.43 0.71 -22.59 15 2 C 0.08 2.14 5.40 -17.82 -0.10 2.04 15 3 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 15 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 15 6 H -0.28 -6.23 7.11 56.52 0.40 -5.82 15 7 C -0.57 -14.18 8.75 -34.44 -0.30 -14.48 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.27 6.03 3.07 -29.03 -0.09 5.94 15 10 H 0.08 1.85 8.05 -51.93 -0.42 1.43 15 11 O -0.56 -12.56 12.53 -35.23 -0.44 -13.00 15 12 C -0.14 -2.60 4.92 -104.89 -0.52 -3.11 15 13 C 0.19 3.31 10.47 -17.47 -0.18 3.12 15 14 N -0.50 -8.47 10.40 -12.34 -0.13 -8.60 15 15 C 0.26 4.44 8.50 -155.96 -1.33 3.11 15 16 N -0.49 -6.97 7.54 31.12 0.23 -6.74 15 17 H 0.45 4.52 8.96 -182.51 -1.64 2.89 15 18 N -0.01 -0.09 13.82 60.35 0.83 0.74 15 19 N -0.21 -3.65 12.39 32.18 0.40 -3.25 15 20 C -0.06 -1.13 7.29 -84.72 -0.62 -1.75 15 21 C 0.00 0.06 9.80 -39.31 -0.39 -0.33 15 22 H 0.26 6.82 8.31 -40.82 -0.34 6.48 15 23 H 0.35 6.55 7.38 45.56 0.34 6.88 15 24 H 0.17 2.50 6.59 -52.49 -0.35 2.16 15 25 H 0.15 2.50 8.06 -52.49 -0.42 2.08 15 LS Contribution 233.66 15.07 3.52 3.52 Total: -1.00 -29.37 233.66 -5.43 -34.80 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -2.03 Total: 5.70 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -3.51 Total: -5.45 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 2.05 Total: -40.43 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.44 Total: -13.00 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.37 -5.43 -34.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535657156.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.171 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds