Wall clock time and date at job start Mon Mar 30 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48491 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46948 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.46809 * 60.00013 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 O 1.42898 * 109.46964 * 300.00198 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.38763 * 120.11685 * 85.00056 * 12 9 7 14 14 N 1.31565 * 121.35538 * 179.97438 * 13 12 9 15 15 C 1.32555 * 121.42916 * 359.97438 * 14 13 12 16 16 N 1.37279 * 133.72283 * 179.97438 * 15 14 13 17 17 H 0.97000 * 126.62741 * 0.06454 * 16 15 14 18 18 N 1.40220 * 106.73766 * 180.02562 * 16 15 14 19 19 N 1.28681 * 109.47745 * 0.02562 * 18 16 15 20 20 C 1.35222 * 110.06702 * 0.02562 * 19 18 16 21 21 C 1.36956 * 120.11660 * 264.72692 * 12 9 7 22 22 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 23 23 H 0.96698 * 113.99898 * 299.99550 * 11 9 7 24 24 H 1.07998 * 119.32211 * 359.97438 * 13 12 9 25 25 H 1.08000 * 120.84630 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 8 0.4299 -2.5750 1.1665 12 6 2.2303 -3.6447 -0.0005 13 6 2.7622 -4.1059 1.1952 14 7 3.6184 -5.1044 1.2236 15 6 4.0086 -5.7122 0.1120 16 7 4.8665 -6.7513 -0.1502 17 1 5.3756 -7.2597 0.5004 18 7 4.8637 -6.9363 -1.5401 19 7 4.0710 -6.0817 -2.0851 20 6 3.5114 -5.2972 -1.1365 21 6 2.5940 -4.2377 -1.1802 22 1 -0.4849 0.8401 0.0004 23 1 0.9223 -2.5299 1.9975 24 1 2.4673 -3.6356 2.1216 25 1 2.1871 -3.8960 -2.1204 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535657156.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:17 Heat of formation + Delta-G solvation = 47.773801 kcal Electronic energy + Delta-G solvation = -14158.868707 eV Core-core repulsion = 11559.650788 eV Total energy + Delta-G solvation = -2599.217920 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.34463 -40.09033 -37.44818 -34.97538 -34.26714 -32.86428 -31.62238 -28.61704 -25.87898 -25.36161 -23.82946 -22.67129 -19.66587 -19.10277 -18.89736 -17.67478 -17.07491 -16.70420 -16.64046 -15.19908 -14.72280 -14.49462 -14.14806 -13.96031 -13.59457 -13.43164 -13.03267 -12.97500 -12.80191 -12.43939 -12.05046 -11.50877 -10.74542 -10.70975 -10.30887 -10.25689 -9.71352 -8.12180 -6.38326 -0.80873 0.11048 1.02518 1.04969 1.43970 1.48222 1.57785 2.39758 2.59492 2.85670 3.12236 3.25708 3.34694 3.79569 3.91570 4.27242 4.40154 4.44451 4.75418 5.01465 5.33045 5.63870 5.70401 5.83664 6.01587 6.50497 6.71227 6.73831 7.35163 7.53190 8.91000 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.046245 B = 0.007562 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.328632 B = 3701.749720 C = 3860.251039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.037 3.963 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.574 4.574 8 H 0.058 0.942 9 C 0.275 3.725 10 H 0.047 0.953 11 O -0.570 6.570 12 C -0.147 4.147 13 C 0.198 3.802 14 N -0.492 5.492 15 C 0.255 3.745 16 N -0.468 5.468 17 H 0.466 0.534 18 N 0.004 4.996 19 N -0.224 5.224 20 C -0.076 4.076 21 C 0.001 3.999 22 H 0.264 0.736 23 H 0.363 0.637 24 H 0.197 0.803 25 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.982 -8.104 2.426 10.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.167 4.167 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.612 4.612 8 H 0.076 0.924 9 C 0.216 3.784 10 H 0.065 0.935 11 O -0.376 6.376 12 C -0.152 4.152 13 C 0.026 3.974 14 N -0.207 5.207 15 C 0.011 3.989 16 N -0.198 5.198 17 H 0.317 0.683 18 N 0.021 4.979 19 N -0.104 5.104 20 C -0.202 4.202 21 C -0.029 4.029 22 H 0.073 0.927 23 H 0.210 0.790 24 H 0.214 0.786 25 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.293 -9.230 1.509 11.860 hybrid contribution 0.342 1.485 0.613 1.643 sum 7.635 -7.745 2.122 11.081 Atomic orbital electron populations 1.70179 1.07365 1.27557 1.47771 1.25739 0.95348 1.02339 0.93263 0.85583 0.79039 0.79688 0.77702 1.19249 1.20807 1.20346 1.21807 0.93268 0.91426 1.54689 0.92414 1.18112 0.86223 0.87699 0.86333 0.93515 1.86604 1.38646 1.96198 1.16115 1.21685 1.00860 0.98965 0.93705 1.23070 0.87072 0.87985 0.99233 1.66902 1.15709 1.10816 1.27230 1.19634 0.94752 0.92636 0.91851 1.47330 1.36917 1.27467 1.08083 0.68340 1.81518 1.14704 1.16095 0.85575 1.74727 1.05974 1.02892 1.26843 1.20605 1.05937 1.02976 0.90683 1.20592 0.92056 0.90050 1.00201 0.92707 0.78993 0.78626 0.82982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.01 12.84 21.45 0.28 -48.74 15 2 C 0.04 1.88 5.40 84.65 0.46 2.34 15 3 Si 0.95 40.55 29.54 68.60 2.03 42.57 15 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 6 H -0.28 -11.58 7.11 99.48 0.71 -10.87 15 7 C -0.57 -28.34 8.75 25.60 0.22 -28.12 15 8 H 0.06 2.83 7.74 -2.91 -0.02 2.80 15 9 C 0.27 12.41 3.07 29.10 0.09 12.50 15 10 H 0.05 2.36 8.05 -2.39 -0.02 2.34 15 11 O -0.57 -25.59 12.53 -148.98 -1.87 -27.46 15 12 C -0.15 -5.47 4.92 -20.04 -0.10 -5.57 15 13 C 0.20 6.40 10.47 84.86 0.89 7.28 15 14 N -0.49 -15.58 10.40 -192.96 -2.01 -17.59 15 15 C 0.26 8.13 8.50 133.97 1.14 9.26 15 16 N -0.47 -11.98 7.54 -55.45 -0.42 -12.40 15 17 H 0.47 7.94 8.96 -213.24 -1.91 6.03 15 18 N 0.00 0.11 13.82 37.02 0.51 0.62 15 19 N -0.22 -7.59 12.39 -52.09 -0.65 -8.24 15 20 C -0.08 -2.65 7.29 39.69 0.29 -2.36 15 21 C 0.00 0.04 9.80 22.45 0.22 0.26 15 22 H 0.26 13.77 8.31 -92.71 -0.77 13.00 15 23 H 0.36 13.32 7.38 -74.06 -0.55 12.77 15 24 H 0.20 5.23 6.59 -2.91 -0.02 5.21 15 25 H 0.15 5.18 8.06 -2.91 -0.02 5.16 15 Total: -1.00 -60.72 233.66 -0.11 -60.83 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -1.19 Total: 14.78 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 3.21 Total: -4.39 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -2.28 Total: -86.34 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -1.87 Total: -27.46 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Total: -60.72 -0.11 -60.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535657156.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.604 kcal (2) G-P(sol) polarization free energy of solvation -60.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds