Wall clock time and date at job start Mon Mar 30 2020 03:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21288 * 119.99853 * 2 1 4 4 N 1.34778 * 119.99965 * 180.02562 * 2 1 3 5 5 C 1.39982 * 119.99984 * 185.27384 * 4 2 1 6 6 C 1.38951 * 119.98301 * 213.60111 * 5 4 2 7 7 C 1.37942 * 120.02349 * 180.20498 * 6 5 4 8 8 C 1.39114 * 119.97771 * 359.52071 * 7 6 5 9 9 N 1.39356 * 120.01759 * 180.27341 * 8 7 6 10 10 C 1.36836 * 119.99807 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99952 * 0.02562 * 10 9 8 12 12 C 1.38752 * 119.99670 * 179.97438 * 10 9 8 13 13 N 1.31618 * 120.00481 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99633 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47236 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46865 * 120.00173 * 14 12 10 17 17 H 1.48502 * 109.47019 * 240.00209 * 14 12 10 18 18 C 1.39109 * 119.96483 * 0.25027 * 8 7 6 19 19 C 1.37955 * 119.97671 * 0.02562 * 18 8 7 20 20 H 1.09004 * 109.46963 * 239.99757 * 1 2 3 21 21 H 1.09007 * 109.47461 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47830 * 119.99863 * 1 2 3 23 23 H 0.97002 * 119.99790 * 5.26910 * 4 2 1 24 24 H 1.08001 * 119.98841 * 0.02562 * 6 5 4 25 25 H 1.07998 * 120.01527 * 179.79205 * 7 6 5 26 26 H 0.97001 * 120.00135 * 359.97438 * 9 8 7 27 27 H 0.97003 * 120.00213 * 179.97438 * 13 12 10 28 28 H 1.07996 * 120.01584 * 180.02562 * 18 8 7 29 29 H 1.08005 * 119.98938 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5762 -1.1698 0.1109 6 6 4.3233 -2.1416 -0.5436 7 6 5.6981 -2.1475 -0.4309 8 6 6.3373 -1.1742 0.3302 9 7 7.7265 -1.1759 0.4399 10 6 8.3549 -0.2180 1.1882 11 1 7.7742 0.5391 1.6940 12 6 9.7381 -0.2202 1.2979 13 7 10.4458 -1.1432 0.6818 14 14 10.5960 1.0880 2.3188 15 1 9.5830 2.0027 2.9038 16 1 11.3649 0.4384 3.4107 17 1 11.5222 1.8624 1.4540 18 6 5.5890 -0.1988 0.9812 19 6 4.2138 -0.1978 0.8720 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3634 1.0277 0.0005 22 1 -0.3635 -0.5138 -0.8899 23 1 1.6989 -2.0054 -0.0780 24 1 3.8271 -2.8943 -1.1383 25 1 6.2783 -2.9049 -0.9369 26 1 8.2481 -1.8562 -0.0141 27 1 11.4128 -1.1444 0.7582 28 1 6.0845 0.5575 1.5719 29 1 3.6327 0.5591 1.3778 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020037980.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:12 Heat of formation + Delta-G solvation = -10.397414 kcal Electronic energy + Delta-G solvation = -14022.164364 eV Core-core repulsion = 11523.964295 eV Total energy + Delta-G solvation = -2498.200069 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75506 -37.93650 -35.37942 -33.58092 -31.60739 -30.01989 -29.74807 -26.89064 -24.43996 -22.26470 -20.99381 -19.84310 -17.81913 -16.95895 -16.42126 -16.27236 -15.06806 -14.51154 -14.14051 -13.83273 -13.10414 -12.97816 -12.68818 -12.52176 -12.31210 -12.05275 -11.86258 -11.31539 -11.23557 -10.75622 -10.52176 -10.32053 -9.85052 -9.53567 -9.20078 -8.41028 -7.97831 -6.54457 -6.46552 -3.70470 2.32725 2.47190 3.03085 3.19204 3.22319 3.23685 3.62490 4.07652 4.70924 4.96862 5.23813 5.25877 5.30213 5.35016 5.74353 5.79549 5.94236 6.34441 6.49338 6.55501 6.96193 7.04712 7.21146 7.30423 7.49267 7.53965 7.75986 7.96091 8.08402 8.61394 8.78243 9.37689 9.57242 10.62549 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.052990 B = 0.006043 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.274385 B = 4632.638531 C = 5095.554747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.495 3.505 3 O -0.538 6.538 4 N -0.658 5.658 5 C -0.005 4.005 6 C -0.075 4.075 7 C -0.229 4.229 8 C 0.205 3.795 9 N -0.562 5.562 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.017 3.983 13 N -0.895 5.895 14 Si 0.931 3.069 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.211 4.211 19 C -0.050 4.050 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.083 0.917 23 H 0.398 0.602 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.399 0.601 27 H 0.273 0.727 28 H 0.118 0.882 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.666 -2.205 -0.580 13.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.283 3.717 3 O -0.415 6.415 4 N -0.302 5.302 5 C -0.100 4.100 6 C -0.097 4.097 7 C -0.254 4.254 8 C 0.084 3.916 9 N -0.164 5.164 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.185 4.185 13 N -0.533 5.533 14 Si 0.758 3.242 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.236 4.236 19 C -0.071 4.071 20 H 0.103 0.897 21 H 0.108 0.892 22 H 0.102 0.898 23 H 0.232 0.768 24 H 0.122 0.878 25 H 0.125 0.875 26 H 0.233 0.767 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.770 -1.322 -0.443 12.846 hybrid contribution 0.524 -0.198 0.169 0.585 sum -12.247 -1.520 -0.274 12.344 Atomic orbital electron populations 1.21894 0.92213 1.05173 1.03829 1.20781 0.90267 0.83859 0.76817 1.90726 1.70511 1.31350 1.48938 1.43238 1.06107 1.08365 1.72508 1.17046 0.81228 1.03489 1.08227 1.20217 0.93235 0.98104 0.98102 1.20023 0.93686 1.02891 1.08804 1.17905 0.84410 0.94253 0.95060 1.41018 1.01505 1.28398 1.45489 1.19793 0.90158 1.07508 1.25305 0.87966 1.25277 0.96483 0.98419 0.98337 1.69702 1.07421 1.33665 1.42504 0.85770 0.79356 0.79982 0.79127 1.19156 1.20623 1.20597 1.20350 0.92644 1.02475 1.08118 1.20582 0.93896 0.96747 0.95884 0.89681 0.89243 0.89787 0.76831 0.87815 0.87496 0.76654 0.91685 0.86461 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.32 36.00 0.37 -1.17 15 2 C 0.50 7.41 7.67 -10.99 -0.08 7.32 15 3 O -0.54 -10.78 14.77 5.55 0.08 -10.70 15 4 N -0.66 -9.55 5.34 -9.81 -0.05 -9.60 15 5 C 0.00 -0.09 6.28 -83.61 -0.53 -0.61 15 6 C -0.08 -1.38 9.95 -39.43 -0.39 -1.77 15 7 C -0.23 -4.69 9.89 -39.36 -0.39 -5.08 15 8 C 0.20 4.77 6.62 -83.79 -0.55 4.22 15 9 N -0.56 -14.20 5.44 -9.59 -0.05 -14.25 15 10 C -0.30 -7.86 9.55 -15.13 -0.14 -8.01 15 11 H 0.10 2.63 5.67 -52.49 -0.30 2.33 15 12 C 0.02 0.45 5.50 -17.45 -0.10 0.36 15 13 N -0.90 -24.35 13.05 55.49 0.72 -23.62 15 14 Si 0.93 20.39 29.55 -169.99 -5.02 15.37 15 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 18 C -0.21 -4.84 9.30 -39.36 -0.37 -5.20 15 19 C -0.05 -1.06 8.65 -39.42 -0.34 -1.40 15 20 H 0.08 0.59 8.14 -51.93 -0.42 0.16 15 21 H 0.09 0.81 8.12 -51.92 -0.42 0.39 15 22 H 0.08 0.57 8.14 -51.93 -0.42 0.14 15 23 H 0.40 4.14 8.82 -40.82 -0.36 3.78 15 24 H 0.10 1.54 8.06 -52.49 -0.42 1.11 15 25 H 0.11 2.02 8.06 -52.49 -0.42 1.60 15 26 H 0.40 10.14 7.90 -40.82 -0.32 9.81 15 27 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 28 H 0.12 2.72 5.95 -52.49 -0.31 2.41 15 29 H 0.11 2.41 6.41 -52.48 -0.34 2.07 15 LS Contribution 256.80 15.07 3.87 3.87 Total: -1.00 -30.69 256.80 -5.85 -36.54 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -2.88 Total: 13.74 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.52 Total: -11.35 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.62 Total: -47.48 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.69 -5.85 -36.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020037980.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.140 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds