Wall clock time and date at job start Mon Mar 30 2020 03:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21288 * 119.99853 * 2 1 4 4 N 1.34778 * 119.99965 * 180.02562 * 2 1 3 5 5 C 1.39982 * 119.99984 * 185.27384 * 4 2 1 6 6 C 1.38951 * 119.98301 * 213.60111 * 5 4 2 7 7 C 1.37942 * 120.02349 * 180.20498 * 6 5 4 8 8 C 1.39114 * 119.97771 * 359.52071 * 7 6 5 9 9 N 1.39356 * 120.01759 * 180.27341 * 8 7 6 10 10 C 1.36836 * 119.99807 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99952 * 0.02562 * 10 9 8 12 12 C 1.38752 * 119.99670 * 179.97438 * 10 9 8 13 13 N 1.31618 * 120.00481 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99633 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47236 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46865 * 120.00173 * 14 12 10 17 17 H 1.48502 * 109.47019 * 240.00209 * 14 12 10 18 18 C 1.39109 * 119.96483 * 0.25027 * 8 7 6 19 19 C 1.37955 * 119.97671 * 0.02562 * 18 8 7 20 20 H 1.09004 * 109.46963 * 239.99757 * 1 2 3 21 21 H 1.09007 * 109.47461 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47830 * 119.99863 * 1 2 3 23 23 H 0.97002 * 119.99790 * 5.26910 * 4 2 1 24 24 H 1.08001 * 119.98841 * 0.02562 * 6 5 4 25 25 H 1.07998 * 120.01527 * 179.79205 * 7 6 5 26 26 H 0.97001 * 120.00135 * 359.97438 * 9 8 7 27 27 H 0.97003 * 120.00213 * 179.97438 * 13 12 10 28 28 H 1.07996 * 120.01584 * 180.02562 * 18 8 7 29 29 H 1.08005 * 119.98938 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5762 -1.1698 0.1109 6 6 4.3233 -2.1416 -0.5436 7 6 5.6981 -2.1475 -0.4309 8 6 6.3373 -1.1742 0.3302 9 7 7.7265 -1.1759 0.4399 10 6 8.3549 -0.2180 1.1882 11 1 7.7742 0.5391 1.6940 12 6 9.7381 -0.2202 1.2979 13 7 10.4458 -1.1432 0.6818 14 14 10.5960 1.0880 2.3188 15 1 9.5830 2.0027 2.9038 16 1 11.3649 0.4384 3.4107 17 1 11.5222 1.8624 1.4540 18 6 5.5890 -0.1988 0.9812 19 6 4.2138 -0.1978 0.8720 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3634 1.0277 0.0005 22 1 -0.3635 -0.5138 -0.8899 23 1 1.6989 -2.0054 -0.0780 24 1 3.8271 -2.8943 -1.1383 25 1 6.2783 -2.9049 -0.9369 26 1 8.2481 -1.8562 -0.0141 27 1 11.4128 -1.1444 0.7582 28 1 6.0845 0.5575 1.5719 29 1 3.6327 0.5591 1.3778 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020037980.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:11 Heat of formation + Delta-G solvation = -31.753068 kcal Electronic energy + Delta-G solvation = -14023.090415 eV Core-core repulsion = 11523.964295 eV Total energy + Delta-G solvation = -2499.126120 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.15339 -39.55457 -37.04131 -35.14575 -33.35830 -31.63600 -30.88904 -28.46724 -26.26436 -23.88038 -22.57568 -21.23400 -19.60707 -18.54408 -17.93816 -17.66368 -16.54466 -16.09735 -15.84864 -15.25300 -14.63903 -14.57801 -14.16141 -14.01087 -13.70785 -13.36574 -13.08180 -12.95278 -12.85524 -12.48854 -12.23523 -12.07033 -11.59844 -11.04273 -10.74555 -10.10347 -9.64959 -8.46284 -8.19572 -5.68737 0.75453 0.77913 1.39705 1.42747 1.53024 1.83205 2.27890 2.44964 2.92890 3.40460 3.49222 3.99237 4.22921 4.30017 4.58743 4.69481 4.74364 4.88449 4.93440 5.17494 5.21952 5.37981 5.45152 5.66332 5.76811 5.84843 5.94553 6.41424 6.75045 6.84719 7.43072 7.53744 7.67717 8.72701 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.052990 B = 0.006043 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.274385 B = 4632.638531 C = 5095.554747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.490 3.510 3 O -0.595 6.595 4 N -0.648 5.648 5 C 0.017 3.983 6 C -0.068 4.068 7 C -0.227 4.227 8 C 0.186 3.814 9 N -0.590 5.590 10 C -0.315 4.315 11 H 0.097 0.903 12 C -0.032 4.032 13 N -0.933 5.933 14 Si 0.994 3.006 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.278 1.278 18 C -0.230 4.230 19 C -0.065 4.065 20 H 0.114 0.886 21 H 0.088 0.912 22 H 0.117 0.883 23 H 0.424 0.576 24 H 0.153 0.847 25 H 0.124 0.876 26 H 0.393 0.607 27 H 0.273 0.727 28 H 0.101 0.899 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.689 -3.133 -1.090 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.280 3.720 3 O -0.476 6.476 4 N -0.295 5.295 5 C -0.079 4.079 6 C -0.088 4.088 7 C -0.251 4.251 8 C 0.069 3.931 9 N -0.196 5.196 10 C -0.445 4.445 11 H 0.114 0.886 12 C -0.230 4.230 13 N -0.573 5.573 14 Si 0.818 3.182 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.203 1.203 18 C -0.255 4.255 19 C -0.086 4.086 20 H 0.132 0.868 21 H 0.106 0.894 22 H 0.135 0.865 23 H 0.262 0.738 24 H 0.170 0.830 25 H 0.142 0.858 26 H 0.226 0.774 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.907 -2.283 -0.957 16.099 hybrid contribution 1.055 0.034 0.247 1.084 sum -14.852 -2.249 -0.710 15.038 Atomic orbital electron populations 1.21901 0.86828 1.06174 1.06759 1.21961 0.92714 0.82697 0.74595 1.90721 1.72185 1.33430 1.51243 1.43237 1.04241 1.09987 1.72037 1.17268 0.83692 1.01613 1.05376 1.20659 0.92264 0.98507 0.97402 1.20394 0.95045 1.02122 1.07572 1.18299 0.84072 0.95080 0.95623 1.40921 1.02019 1.29119 1.47559 1.19962 0.90738 1.07965 1.25828 0.88557 1.26074 0.96832 1.00477 0.99643 1.69797 1.07454 1.35526 1.44567 0.84823 0.78137 0.77561 0.77648 1.18772 1.20120 1.20337 1.20384 0.93641 1.02668 1.08828 1.20653 0.93213 0.97809 0.96913 0.86754 0.89351 0.86504 0.73795 0.82978 0.85841 0.77369 0.91749 0.88104 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 10.32 71.23 0.74 -1.35 15 2 C 0.49 13.09 7.67 87.65 0.67 13.76 15 3 O -0.60 -23.14 14.77 -3.06 -0.05 -23.19 15 4 N -0.65 -16.20 5.34 -303.34 -1.62 -17.82 15 5 C 0.02 0.59 6.28 38.18 0.24 0.83 15 6 C -0.07 -2.22 9.95 22.37 0.22 -2.00 15 7 C -0.23 -8.93 9.89 22.41 0.22 -8.71 15 8 C 0.19 8.81 6.62 38.37 0.25 9.06 15 9 N -0.59 -31.04 5.44 -184.24 -1.00 -32.04 15 10 C -0.31 -17.41 9.55 84.04 0.80 -16.61 15 11 H 0.10 5.25 5.67 -2.91 -0.02 5.23 15 12 C -0.03 -1.75 5.50 84.85 0.47 -1.28 15 13 N -0.93 -52.64 13.05 21.64 0.28 -52.35 15 14 Si 0.99 43.16 29.55 68.60 2.03 45.19 15 15 H -0.26 -11.08 7.11 99.48 0.71 -10.38 15 16 H -0.28 -11.62 7.11 99.48 0.71 -10.91 15 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 18 C -0.23 -10.86 9.30 22.41 0.21 -10.65 15 19 C -0.07 -2.74 8.65 22.37 0.19 -2.55 15 20 H 0.11 0.93 8.14 -2.38 -0.02 0.91 15 21 H 0.09 1.27 8.12 -2.38 -0.02 1.25 15 22 H 0.12 0.87 8.14 -2.39 -0.02 0.85 15 23 H 0.42 6.45 8.82 -92.71 -0.82 5.64 15 24 H 0.15 3.58 8.06 -2.91 -0.02 3.56 15 25 H 0.12 4.44 8.06 -2.91 -0.02 4.42 15 26 H 0.39 20.87 7.90 -92.71 -0.73 20.14 15 27 H 0.27 14.50 8.31 -92.71 -0.77 13.73 15 28 H 0.10 4.97 5.95 -2.91 -0.02 4.96 15 29 H 0.11 4.66 6.41 -2.91 -0.02 4.64 15 Total: -1.00 -70.07 256.80 3.30 -66.77 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.36 Total: 32.93 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 4.02 Total: -19.49 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -2.34 Total: -102.21 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -70.07 3.30 -66.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020037980.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.015 kcal (2) G-P(sol) polarization free energy of solvation -70.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds