Wall clock time and date at job start Mon Mar 30 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21287 * 119.99743 * 2 1 4 4 N 1.34773 * 119.99694 * 179.97438 * 2 1 3 5 5 C 1.39928 * 119.99894 * 185.27355 * 4 2 1 6 6 C 1.38989 * 120.02593 * 213.31344 * 5 4 2 7 7 C 1.38187 * 120.10647 * 179.76470 * 6 5 4 8 8 C 1.38123 * 120.16045 * 0.51647 * 7 6 5 9 9 C 1.39105 * 120.04834 * 359.49053 * 8 7 6 10 10 N 1.39297 * 120.05330 * 180.23261 * 9 8 7 11 11 C 1.36857 * 120.00249 * 0.02562 * 10 9 8 12 12 H 1.08001 * 119.99394 * 359.97438 * 11 10 9 13 13 C 1.38789 * 120.00123 * 180.02562 * 11 10 9 14 14 N 1.31588 * 120.00249 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99793 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47032 * 89.99617 * 15 13 11 17 17 H 1.48500 * 109.47211 * 209.99595 * 15 13 11 18 18 H 1.48492 * 109.47104 * 329.99846 * 15 13 11 19 19 C 1.38668 * 120.02369 * 33.34050 * 5 4 2 20 20 H 1.09010 * 109.47228 * 270.00270 * 1 2 3 21 21 H 1.08999 * 109.46948 * 29.99925 * 1 2 3 22 22 H 1.08993 * 109.47433 * 150.00245 * 1 2 3 23 23 H 0.96999 * 120.00550 * 5.27038 * 4 2 1 24 24 H 1.07996 * 119.94803 * 0.05172 * 6 5 4 25 25 H 1.08003 * 119.92103 * 180.28282 * 7 6 5 26 26 H 1.08003 * 119.97414 * 179.76182 * 8 7 6 27 27 H 0.97001 * 119.99971 * 179.97438 * 10 9 8 28 28 H 0.96999 * 120.00015 * 180.02562 * 14 13 11 29 29 H 1.07998 * 120.08063 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5756 -1.1698 0.1119 6 6 4.3233 -2.1455 -0.5366 7 6 5.7012 -2.1468 -0.4317 8 6 6.3403 -1.1852 0.3263 9 6 5.5985 -0.2056 0.9783 10 7 6.2433 0.7671 1.7389 11 6 7.6077 0.7599 1.8448 12 1 8.1845 -0.0003 1.3389 13 6 8.2501 1.7288 2.6030 14 7 7.5473 2.6546 3.2197 15 14 10.1125 1.7184 2.7481 16 1 10.6985 2.5380 1.6571 17 1 10.5098 2.2857 4.0616 18 1 10.6095 0.3232 2.6406 19 6 4.2129 -0.1991 0.8699 20 1 -0.3634 0.0000 1.0278 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8899 -0.5137 23 1 1.6989 -2.0055 -0.0763 24 1 3.8270 -2.9013 -1.1273 25 1 6.2796 -2.9037 -0.9407 26 1 7.4172 -1.1913 0.4094 27 1 5.7252 1.4501 2.1929 28 1 7.9963 3.3320 3.7493 29 1 3.6340 0.5596 1.3754 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020049811.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:13 Heat of formation + Delta-G solvation = -9.741613 kcal Electronic energy + Delta-G solvation = -14158.442553 eV Core-core repulsion = 11660.270921 eV Total energy + Delta-G solvation = -2498.171632 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.85576 -37.87481 -35.37234 -33.73474 -31.72890 -30.40452 -28.54069 -27.38079 -24.56420 -22.28964 -20.81056 -20.00092 -17.62046 -17.30960 -16.43835 -15.28082 -15.08036 -14.96687 -14.31619 -13.85931 -13.40691 -12.94846 -12.69379 -12.50802 -12.32575 -12.03537 -11.64281 -11.25035 -10.97589 -10.73848 -10.45979 -10.26873 -10.01566 -9.55535 -9.27381 -8.64412 -7.43012 -6.64419 -6.50001 -3.68473 2.24643 2.61268 3.04631 3.19664 3.21761 3.23617 3.50152 4.09882 4.74074 4.91656 5.16316 5.29195 5.36749 5.37581 5.76579 5.86707 6.10982 6.33036 6.51003 6.61217 6.80410 7.18213 7.26625 7.28217 7.56662 7.58933 7.79986 7.91424 8.11155 8.52067 8.81899 9.43001 9.62443 10.66997 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.041172 B = 0.006935 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.913022 B = 4036.418786 C = 4649.132174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.500 3.500 3 O -0.522 6.522 4 N -0.671 5.671 5 C 0.188 3.812 6 C -0.273 4.273 7 C -0.047 4.047 8 C -0.236 4.236 9 C 0.222 3.778 10 N -0.559 5.559 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.018 3.982 14 N -0.893 5.893 15 Si 0.932 3.068 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.269 1.269 19 C -0.234 4.234 20 H 0.093 0.907 21 H 0.091 0.909 22 H 0.077 0.923 23 H 0.403 0.597 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.399 0.601 28 H 0.274 0.726 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 -7.779 -4.438 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.287 3.713 3 O -0.397 6.397 4 N -0.316 5.316 5 C 0.094 3.906 6 C -0.297 4.297 7 C -0.067 4.067 8 C -0.261 4.261 9 C 0.100 3.900 10 N -0.161 5.161 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.185 4.185 14 N -0.531 5.531 15 Si 0.759 3.241 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.260 4.260 20 H 0.111 0.889 21 H 0.110 0.890 22 H 0.096 0.904 23 H 0.238 0.762 24 H 0.117 0.883 25 H 0.123 0.877 26 H 0.132 0.868 27 H 0.234 0.766 28 H 0.084 0.916 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.766 -6.686 -4.166 11.786 hybrid contribution 0.402 -0.051 0.269 0.487 sum -8.364 -6.738 -3.897 11.425 Atomic orbital electron populations 1.21875 0.91773 1.04628 1.04669 1.20876 0.90462 0.83732 0.76186 1.90790 1.70378 1.31193 1.47329 1.43584 1.06297 1.08971 1.72787 1.17220 0.80814 0.96677 0.95920 1.19976 0.93917 1.04664 1.11144 1.20369 0.93321 0.96649 0.96394 1.20423 0.99240 0.99369 1.07043 1.17649 0.90538 0.89862 0.91941 1.41010 1.06403 1.25125 1.43574 1.19742 0.81866 1.12762 1.28569 0.87996 1.25296 1.00806 0.95713 0.96707 1.69698 1.36535 1.15338 1.31500 0.85825 0.81826 0.78716 0.77774 1.20285 1.20775 1.19366 1.20093 0.92779 1.04385 1.08761 0.88878 0.88975 0.90377 0.76219 0.88267 0.87739 0.86766 0.76576 0.91628 0.86692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.31 36.01 0.37 -1.23 15 2 C 0.50 7.81 7.68 -10.99 -0.08 7.73 15 3 O -0.52 -11.04 14.79 5.55 0.08 -10.96 15 4 N -0.67 -10.11 5.34 -9.88 -0.05 -10.16 15 5 C 0.19 3.67 6.28 -83.72 -0.53 3.14 15 6 C -0.27 -5.01 9.96 -39.32 -0.39 -5.40 15 7 C -0.05 -0.91 10.03 -39.64 -0.40 -1.31 15 8 C -0.24 -5.29 9.30 -39.30 -0.37 -5.65 15 9 C 0.22 5.43 6.62 -83.87 -0.55 4.87 15 10 N -0.56 -14.84 5.43 -9.62 -0.05 -14.89 15 11 C -0.30 -8.06 9.56 -15.10 -0.14 -8.21 15 12 H 0.10 2.62 5.68 -52.49 -0.30 2.32 15 13 C 0.02 0.47 5.50 -17.45 -0.10 0.37 15 14 N -0.89 -24.99 13.05 55.49 0.72 -24.27 15 15 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 15 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 19 C -0.23 -5.36 8.50 -39.15 -0.33 -5.69 15 20 H 0.09 0.75 8.14 -51.92 -0.42 0.33 15 21 H 0.09 0.85 8.14 -51.93 -0.42 0.42 15 22 H 0.08 0.50 8.14 -51.93 -0.42 0.08 15 23 H 0.40 4.29 8.82 -40.82 -0.36 3.93 15 24 H 0.10 1.52 8.06 -52.49 -0.42 1.10 15 25 H 0.10 1.69 8.06 -52.48 -0.42 1.26 15 26 H 0.11 2.54 5.95 -52.48 -0.31 2.23 15 27 H 0.40 10.94 7.90 -40.82 -0.32 10.62 15 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 29 H 0.12 2.76 6.41 -52.49 -0.34 2.43 15 LS Contribution 256.82 15.07 3.87 3.87 Total: -1.00 -31.60 256.82 -5.85 -37.45 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -2.88 Total: 14.81 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -2.52 Total: -11.37 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.62 Total: -49.32 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.60 -5.85 -37.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020049811.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.708 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds