Wall clock time and date at job start Mon Mar 30 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21287 * 119.99743 * 2 1 4 4 N 1.34773 * 119.99694 * 179.97438 * 2 1 3 5 5 C 1.39928 * 119.99894 * 185.27355 * 4 2 1 6 6 C 1.38989 * 120.02593 * 213.31344 * 5 4 2 7 7 C 1.38187 * 120.10647 * 179.76470 * 6 5 4 8 8 C 1.38123 * 120.16045 * 0.51647 * 7 6 5 9 9 C 1.39105 * 120.04834 * 359.49053 * 8 7 6 10 10 N 1.39297 * 120.05330 * 180.23261 * 9 8 7 11 11 C 1.36857 * 120.00249 * 0.02562 * 10 9 8 12 12 H 1.08001 * 119.99394 * 359.97438 * 11 10 9 13 13 C 1.38789 * 120.00123 * 180.02562 * 11 10 9 14 14 N 1.31588 * 120.00249 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99793 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47032 * 89.99617 * 15 13 11 17 17 H 1.48500 * 109.47211 * 209.99595 * 15 13 11 18 18 H 1.48492 * 109.47104 * 329.99846 * 15 13 11 19 19 C 1.38668 * 120.02369 * 33.34050 * 5 4 2 20 20 H 1.09010 * 109.47228 * 270.00270 * 1 2 3 21 21 H 1.08999 * 109.46948 * 29.99925 * 1 2 3 22 22 H 1.08993 * 109.47433 * 150.00245 * 1 2 3 23 23 H 0.96999 * 120.00550 * 5.27038 * 4 2 1 24 24 H 1.07996 * 119.94803 * 0.05172 * 6 5 4 25 25 H 1.08003 * 119.92103 * 180.28282 * 7 6 5 26 26 H 1.08003 * 119.97414 * 179.76182 * 8 7 6 27 27 H 0.97001 * 119.99971 * 179.97438 * 10 9 8 28 28 H 0.96999 * 120.00015 * 180.02562 * 14 13 11 29 29 H 1.07998 * 120.08063 * 0.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5756 -1.1698 0.1119 6 6 4.3233 -2.1455 -0.5366 7 6 5.7012 -2.1468 -0.4317 8 6 6.3403 -1.1852 0.3263 9 6 5.5985 -0.2056 0.9783 10 7 6.2433 0.7671 1.7389 11 6 7.6077 0.7599 1.8448 12 1 8.1845 -0.0003 1.3389 13 6 8.2501 1.7288 2.6030 14 7 7.5473 2.6546 3.2197 15 14 10.1125 1.7184 2.7481 16 1 10.6985 2.5380 1.6571 17 1 10.5098 2.2857 4.0616 18 1 10.6095 0.3232 2.6406 19 6 4.2129 -0.1991 0.8699 20 1 -0.3634 0.0000 1.0278 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8899 -0.5137 23 1 1.6989 -2.0055 -0.0763 24 1 3.8270 -2.9013 -1.1273 25 1 6.2796 -2.9037 -0.9407 26 1 7.4172 -1.1913 0.4094 27 1 5.7252 1.4501 2.1929 28 1 7.9963 3.3320 3.7493 29 1 3.6340 0.5596 1.3754 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020049811.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:13 Heat of formation + Delta-G solvation = -32.470750 kcal Electronic energy + Delta-G solvation = -14159.428162 eV Core-core repulsion = 11660.270921 eV Total energy + Delta-G solvation = -2499.157241 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.28087 -39.52648 -37.07724 -35.31263 -33.58296 -31.63451 -30.15187 -28.87533 -26.49043 -23.85117 -22.45940 -21.43044 -19.47941 -18.88982 -17.75219 -16.92310 -16.66093 -16.49376 -16.01235 -15.52889 -14.82795 -14.55692 -14.15398 -14.08346 -13.50330 -13.35265 -13.11213 -12.93030 -12.74083 -12.35912 -12.15208 -11.95940 -11.81523 -11.13976 -10.76916 -10.47493 -9.06498 -8.45091 -8.44752 -5.72209 0.64668 0.93655 1.39629 1.47183 1.53567 1.75501 2.25100 2.32796 2.94334 3.42673 3.45891 3.92963 4.30698 4.49595 4.57309 4.66805 4.67973 4.91246 4.93913 5.09155 5.16203 5.32387 5.63873 5.65638 5.77514 5.84144 6.00616 6.45463 6.62755 6.82853 7.30934 7.52429 7.66456 8.74761 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.041172 B = 0.006935 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.913022 B = 4036.418786 C = 4649.132174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.492 3.508 3 O -0.586 6.586 4 N -0.658 5.658 5 C 0.188 3.812 6 C -0.246 4.246 7 C -0.041 4.041 8 C -0.254 4.254 9 C 0.201 3.799 10 N -0.594 5.594 11 C -0.316 4.316 12 H 0.107 0.893 13 C -0.039 4.039 14 N -0.940 5.940 15 Si 1.003 2.997 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.256 1.256 19 C -0.257 4.257 20 H 0.111 0.889 21 H 0.094 0.906 22 H 0.120 0.880 23 H 0.429 0.571 24 H 0.148 0.852 25 H 0.147 0.853 26 H 0.109 0.891 27 H 0.385 0.615 28 H 0.272 0.728 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.781 -10.824 -6.266 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.283 3.717 3 O -0.466 6.466 4 N -0.305 5.305 5 C 0.093 3.907 6 C -0.270 4.270 7 C -0.061 4.061 8 C -0.279 4.279 9 C 0.084 3.916 10 N -0.199 5.199 11 C -0.445 4.445 12 H 0.125 0.875 13 C -0.237 4.237 14 N -0.580 5.580 15 Si 0.826 3.174 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.180 1.180 19 C -0.283 4.283 20 H 0.130 0.870 21 H 0.113 0.887 22 H 0.138 0.862 23 H 0.269 0.731 24 H 0.166 0.834 25 H 0.165 0.835 26 H 0.127 0.873 27 H 0.217 0.783 28 H 0.082 0.918 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.121 -9.846 -6.048 15.361 hybrid contribution 0.512 0.655 0.640 1.049 sum -9.609 -9.191 -5.409 14.355 Atomic orbital electron populations 1.21903 0.86238 1.06863 1.06474 1.22123 0.92973 0.82605 0.74028 1.90782 1.72193 1.33533 1.50057 1.43560 1.04512 1.10457 1.71939 1.17441 0.83320 0.95560 0.94406 1.20570 0.93669 1.03971 1.08759 1.20870 0.94227 0.96101 0.94887 1.20634 0.99248 1.00032 1.07959 1.18138 0.91469 0.90031 0.91943 1.41004 1.06272 1.26462 1.46187 1.20056 0.82437 1.13158 1.28883 0.87514 1.26258 1.05536 0.95331 0.96532 1.69835 1.38246 1.16602 1.33349 0.84764 0.75957 0.79147 0.77553 1.19950 1.20638 1.18034 1.20143 0.92403 1.05437 1.10356 0.87044 0.88720 0.86181 0.73139 0.83404 0.83513 0.87300 0.78263 0.91848 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 10.31 71.24 0.73 -1.62 15 2 C 0.49 14.50 7.68 87.66 0.67 15.17 15 3 O -0.59 -25.27 14.79 -3.05 -0.05 -25.32 15 4 N -0.66 -17.72 5.34 -303.57 -1.62 -19.34 15 5 C 0.19 6.95 6.28 38.13 0.24 7.19 15 6 C -0.25 -7.90 9.96 22.44 0.22 -7.67 15 7 C -0.04 -1.45 10.03 22.23 0.22 -1.22 15 8 C -0.25 -11.27 9.30 22.45 0.21 -11.06 15 9 C 0.20 10.18 6.62 38.34 0.25 10.43 15 10 N -0.59 -33.60 5.43 -184.34 -1.00 -34.60 15 11 C -0.32 -17.84 9.56 84.04 0.80 -17.03 15 12 H 0.11 5.68 5.68 -2.91 -0.02 5.67 15 13 C -0.04 -2.19 5.50 84.86 0.47 -1.72 15 14 N -0.94 -55.68 13.05 21.65 0.28 -55.40 15 15 Si 1.00 43.45 29.55 68.60 2.03 45.48 15 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 17 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 18 H -0.26 -10.41 7.11 99.48 0.71 -9.70 15 19 C -0.26 -12.06 8.50 22.55 0.19 -11.87 15 20 H 0.11 1.38 8.14 -2.38 -0.02 1.36 15 21 H 0.09 1.46 8.14 -2.39 -0.02 1.44 15 22 H 0.12 0.84 8.14 -2.39 -0.02 0.82 15 23 H 0.43 6.97 8.82 -92.71 -0.82 6.15 15 24 H 0.15 3.42 8.06 -2.91 -0.02 3.40 15 25 H 0.15 3.92 8.06 -2.91 -0.02 3.90 15 26 H 0.11 4.88 5.95 -2.91 -0.02 4.86 15 27 H 0.39 23.01 7.90 -92.71 -0.73 22.28 15 28 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 29 H 0.09 4.68 6.41 -2.91 -0.02 4.66 15 Total: -1.00 -74.78 256.82 3.30 -71.48 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.36 Total: 37.12 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 4.02 Total: -19.41 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -2.34 Total: -109.34 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.05 Total: -25.32 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -74.78 3.30 -71.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020049811.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.007 kcal (2) G-P(sol) polarization free energy of solvation -74.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds