Wall clock time and date at job start Mon Mar 30 2020 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47129 * 2 1 4 4 C 1.50695 * 109.47024 * 120.00134 * 2 1 3 5 5 H 1.08007 * 120.00275 * 120.00159 * 4 2 1 6 6 C 1.37874 * 120.00093 * 299.99609 * 4 2 1 7 7 N 1.31517 * 120.00006 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00027 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47210 * 89.99500 * 8 6 4 10 10 H 1.48496 * 109.47089 * 209.99983 * 8 6 4 11 11 H 1.48503 * 109.46926 * 329.99903 * 8 6 4 12 12 C 1.50700 * 109.47046 * 239.99973 * 2 1 3 13 13 O 1.21297 * 120.00484 * 269.99897 * 12 2 1 14 14 C 1.46789 * 119.99891 * 89.99899 * 12 2 1 15 15 C 1.40016 * 120.22196 * 0.02562 * 14 12 2 16 16 C 1.37673 * 119.87844 * 179.97438 * 15 14 12 17 17 C 1.38631 * 120.33983 * 359.74741 * 16 15 14 18 18 C 1.38048 * 120.45572 * 0.51528 * 17 16 15 19 19 C 1.38699 * 120.10932 * 359.48375 * 18 17 16 20 20 O 1.35593 * 120.16828 * 180.23764 * 19 18 17 21 21 H 1.08999 * 109.47501 * 299.99770 * 1 2 3 22 22 H 1.08996 * 109.47521 * 60.00158 * 1 2 3 23 23 H 1.09009 * 109.47175 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99877 * 180.02562 * 7 6 4 25 25 H 1.08002 * 120.06425 * 0.02562 * 15 14 12 26 26 H 1.07997 * 119.83379 * 179.97438 * 16 15 14 27 27 H 1.08003 * 119.77070 * 180.27338 * 17 16 15 28 28 H 1.08002 * 119.94939 * 179.76781 * 18 17 16 29 29 H 0.96701 * 114.00350 * 90.00602 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6997 10 1 0.9761 1.9951 3.9068 11 1 0.8472 2.1765 1.4920 12 6 2.0323 -0.7104 -1.2305 13 8 2.2345 -1.9060 -1.2005 14 6 2.2769 0.0445 -2.4653 15 6 2.0456 1.4249 -2.5050 16 6 2.2779 2.1261 -3.6668 17 6 2.7450 1.4734 -4.7972 18 6 2.9727 0.1120 -4.7752 19 6 2.7450 -0.6129 -3.6148 20 8 2.9728 -1.9493 -3.5905 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.9026 -0.5285 4.4375 25 1 1.6864 1.9388 -1.6257 26 1 2.0989 3.1907 -3.6968 27 1 2.9283 2.0332 -5.7024 28 1 3.3330 -0.3888 -5.6616 29 1 3.8718 -2.1904 -3.3283 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031990373.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:59 Heat of formation + Delta-G solvation = -50.786807 kcal Electronic energy + Delta-G solvation = -14610.815991 eV Core-core repulsion = 12078.571755 eV Total energy + Delta-G solvation = -2532.244236 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.95446 -37.76712 -36.49765 -33.84454 -31.70216 -30.58048 -29.63003 -25.18686 -24.44562 -22.68199 -21.64885 -18.88398 -18.08527 -16.82766 -16.12296 -15.63779 -15.15790 -14.80411 -14.32066 -13.91316 -13.58365 -13.25902 -12.69129 -12.26034 -12.11397 -12.02049 -11.81989 -11.46127 -10.96976 -10.62778 -10.51681 -10.22140 -9.67000 -9.13775 -8.87411 -8.62601 -8.54922 -8.45846 -6.08970 -4.09436 0.94064 1.35770 3.06544 3.23532 3.29683 3.35376 3.92573 4.35898 4.37811 4.71110 4.93101 5.02385 5.21907 5.28567 5.52647 5.79274 5.91468 6.06566 6.20072 6.31706 6.35599 6.47632 6.48849 6.58977 6.82003 6.88400 7.16854 7.59573 7.86281 8.41945 8.56090 9.01177 9.49854 11.04077 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.039131 B = 0.009071 C = 0.007844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.366980 B = 3086.007314 C = 3568.770787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.029 4.029 3 H 0.049 0.951 4 C -0.508 4.508 5 H 0.084 0.916 6 C 0.071 3.929 7 N -0.896 5.896 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.266 1.266 12 C 0.403 3.597 13 O -0.435 6.435 14 C -0.183 4.183 15 C -0.059 4.059 16 C -0.147 4.147 17 C -0.086 4.086 18 C -0.166 4.166 19 C 0.155 3.845 20 O -0.482 6.482 21 H 0.049 0.951 22 H 0.034 0.966 23 H 0.058 0.942 24 H 0.265 0.735 25 H 0.139 0.861 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 7.086 -14.795 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.048 4.048 3 H 0.067 0.933 4 C -0.546 4.546 5 H 0.102 0.898 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.191 1.191 12 C 0.279 3.721 13 O -0.308 6.308 14 C -0.185 4.185 15 C -0.077 4.077 16 C -0.165 4.165 17 C -0.104 4.104 18 C -0.184 4.184 19 C 0.110 3.890 20 O -0.293 6.293 21 H 0.068 0.932 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.157 0.843 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.168 6.378 -14.743 16.064 hybrid contribution -0.142 0.936 0.353 1.010 sum 0.025 7.313 -14.390 16.142 Atomic orbital electron populations 1.22031 0.96827 1.01724 0.99256 1.19594 0.93575 0.97822 0.93808 0.93313 1.20865 1.32435 1.13689 0.87624 0.89763 1.24979 0.95700 0.96682 0.95702 1.69887 1.45397 1.40156 0.97914 0.86870 0.80782 0.83659 0.77057 1.20429 1.22284 1.19126 1.22581 0.73720 0.88501 0.87342 1.90434 1.38651 1.16840 1.84840 1.21560 1.05276 0.95273 0.96341 1.21588 0.95037 0.92656 0.98411 1.21123 1.01917 1.00279 0.93176 1.21153 0.97112 0.93881 0.98293 1.21389 1.04239 0.94457 0.98323 1.18811 0.95320 0.83289 0.91610 1.84698 1.36287 1.17837 1.90455 0.93238 0.94680 0.92257 0.92510 0.84312 0.85512 0.85673 0.85330 0.74837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.65 37.16 0.32 -2.74 15 2 C -0.03 -0.68 1.67 -92.93 -0.15 -0.83 15 3 H 0.05 1.09 5.52 -51.93 -0.29 0.80 15 4 C -0.51 -14.63 8.90 -34.44 -0.31 -14.94 15 5 H 0.08 2.72 7.38 -52.48 -0.39 2.34 15 6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 15 7 N -0.90 -27.58 13.96 55.43 0.77 -26.80 15 8 Si 0.89 21.36 24.37 -169.99 -4.14 17.22 15 9 H -0.28 -6.53 6.87 56.52 0.39 -6.14 15 10 H -0.30 -7.13 7.11 56.52 0.40 -6.73 15 11 H -0.27 -5.89 6.53 56.52 0.37 -5.52 15 12 C 0.40 9.00 6.16 -30.85 -0.19 8.81 15 13 O -0.43 -10.91 14.77 -16.37 -0.24 -11.15 15 14 C -0.18 -3.31 5.88 -104.94 -0.62 -3.93 15 15 C -0.06 -0.89 9.36 -39.12 -0.37 -1.26 15 16 C -0.15 -1.78 10.02 -39.64 -0.40 -2.17 15 17 C -0.09 -0.97 10.03 -39.51 -0.40 -1.36 15 18 C -0.17 -2.12 9.97 -39.48 -0.39 -2.51 15 19 C 0.16 2.53 6.73 -38.58 -0.26 2.27 15 20 O -0.48 -7.98 11.58 -40.38 -0.47 -8.45 15 21 H 0.05 1.09 3.27 -51.93 -0.17 0.92 15 22 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.06 1.32 8.14 -51.92 -0.42 0.90 15 24 H 0.26 7.59 8.31 -40.82 -0.34 7.26 15 25 H 0.14 2.05 6.36 -52.49 -0.33 1.71 15 26 H 0.13 1.17 8.06 -52.49 -0.42 0.75 15 27 H 0.13 1.00 8.06 -52.48 -0.42 0.58 15 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 15 29 H 0.39 5.00 9.06 45.56 0.41 5.41 15 LS Contribution 248.35 15.07 3.74 3.74 Total: -1.00 -33.50 248.35 -5.25 -38.76 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.06 Total: 3.40 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -2.86 Total: -16.72 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.77 Total: -26.80 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.71 Total: -19.59 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.14 Total: 17.22 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.50 -5.25 -38.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031990373.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.030 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds