Wall clock time and date at job start Mon Mar 30 2020 02:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47129 * 2 1 4 4 C 1.50695 * 109.47024 * 120.00134 * 2 1 3 5 5 H 1.08007 * 120.00275 * 120.00159 * 4 2 1 6 6 C 1.37874 * 120.00093 * 299.99609 * 4 2 1 7 7 N 1.31517 * 120.00006 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00027 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47210 * 89.99500 * 8 6 4 10 10 H 1.48496 * 109.47089 * 209.99983 * 8 6 4 11 11 H 1.48503 * 109.46926 * 329.99903 * 8 6 4 12 12 C 1.50700 * 109.47046 * 239.99973 * 2 1 3 13 13 O 1.21297 * 120.00484 * 269.99897 * 12 2 1 14 14 C 1.46789 * 119.99891 * 89.99899 * 12 2 1 15 15 C 1.40016 * 120.22196 * 0.02562 * 14 12 2 16 16 C 1.37673 * 119.87844 * 179.97438 * 15 14 12 17 17 C 1.38631 * 120.33983 * 359.74741 * 16 15 14 18 18 C 1.38048 * 120.45572 * 0.51528 * 17 16 15 19 19 C 1.38699 * 120.10932 * 359.48375 * 18 17 16 20 20 O 1.35593 * 120.16828 * 180.23764 * 19 18 17 21 21 H 1.08999 * 109.47501 * 299.99770 * 1 2 3 22 22 H 1.08996 * 109.47521 * 60.00158 * 1 2 3 23 23 H 1.09009 * 109.47175 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99877 * 180.02562 * 7 6 4 25 25 H 1.08002 * 120.06425 * 0.02562 * 15 14 12 26 26 H 1.07997 * 119.83379 * 179.97438 * 16 15 14 27 27 H 1.08003 * 119.77070 * 180.27338 * 17 16 15 28 28 H 1.08002 * 119.94939 * 179.76781 * 18 17 16 29 29 H 0.96701 * 114.00350 * 90.00602 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6997 10 1 0.9761 1.9951 3.9068 11 1 0.8472 2.1765 1.4920 12 6 2.0323 -0.7104 -1.2305 13 8 2.2345 -1.9060 -1.2005 14 6 2.2769 0.0445 -2.4653 15 6 2.0456 1.4249 -2.5050 16 6 2.2779 2.1261 -3.6668 17 6 2.7450 1.4734 -4.7972 18 6 2.9727 0.1120 -4.7752 19 6 2.7450 -0.6129 -3.6148 20 8 2.9728 -1.9493 -3.5905 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.9026 -0.5285 4.4375 25 1 1.6864 1.9388 -1.6257 26 1 2.0989 3.1907 -3.6968 27 1 2.9283 2.0332 -5.7024 28 1 3.3330 -0.3888 -5.6616 29 1 3.8718 -2.1904 -3.3283 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031990373.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:58 Heat of formation + Delta-G solvation = -75.106963 kcal Electronic energy + Delta-G solvation = -14611.870592 eV Core-core repulsion = 12078.571755 eV Total energy + Delta-G solvation = -2533.298837 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.27534 -39.30571 -37.64730 -35.81780 -33.57556 -31.97242 -30.71702 -27.21144 -25.98995 -23.92346 -22.98629 -20.45441 -19.35205 -18.73464 -17.62073 -17.12893 -16.44231 -16.39177 -15.68116 -15.39148 -15.10496 -14.84940 -14.47012 -14.00363 -13.64914 -13.21876 -13.08866 -12.82844 -12.61659 -12.53594 -12.10043 -11.68361 -11.49949 -11.25071 -10.79583 -10.14830 -9.96630 -9.63465 -8.31510 -6.39545 -0.26993 0.33165 1.32312 1.37451 1.49736 1.63635 2.32138 2.75305 3.02447 3.24464 3.30257 3.90496 4.15498 4.26753 4.39031 4.46105 4.50252 4.61498 4.75638 4.83366 4.93406 5.07828 5.35508 5.37329 5.39978 5.47116 5.58114 5.87661 6.22828 6.67606 6.76364 6.85392 7.24799 8.86181 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.039131 B = 0.009071 C = 0.007844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.366980 B = 3086.007314 C = 3568.770787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 H 0.073 0.927 4 C -0.524 4.524 5 H 0.022 0.978 6 C 0.008 3.992 7 N -0.951 5.951 8 Si 0.957 3.043 9 H -0.265 1.265 10 H -0.295 1.295 11 H -0.225 1.225 12 C 0.400 3.600 13 O -0.486 6.486 14 C -0.220 4.220 15 C -0.065 4.065 16 C -0.137 4.137 17 C -0.064 4.064 18 C -0.163 4.163 19 C 0.136 3.864 20 O -0.503 6.503 21 H 0.051 0.949 22 H 0.077 0.923 23 H 0.038 0.962 24 H 0.268 0.732 25 H 0.143 0.857 26 H 0.167 0.833 27 H 0.172 0.828 28 H 0.154 0.846 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 11.046 -17.721 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.053 4.053 3 H 0.090 0.910 4 C -0.562 4.562 5 H 0.041 0.959 6 C -0.189 4.189 7 N -0.591 5.591 8 Si 0.781 3.219 9 H -0.191 1.191 10 H -0.223 1.223 11 H -0.147 1.147 12 C 0.280 3.720 13 O -0.363 6.363 14 C -0.222 4.222 15 C -0.083 4.083 16 C -0.155 4.155 17 C -0.082 4.082 18 C -0.181 4.181 19 C 0.091 3.909 20 O -0.316 6.316 21 H 0.069 0.931 22 H 0.096 0.904 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.160 0.840 26 H 0.184 0.816 27 H 0.189 0.811 28 H 0.172 0.828 29 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.861 10.352 -17.703 20.526 hybrid contribution 0.287 -0.339 1.166 1.248 sum -0.574 10.013 -16.537 19.340 Atomic orbital electron populations 1.21950 0.94938 1.01240 1.01333 1.19617 0.95121 0.98247 0.92275 0.90964 1.21051 1.32016 1.12430 0.90658 0.95946 1.26043 0.97266 1.00835 0.94737 1.70074 1.47502 1.42751 0.98771 0.85727 0.78578 0.79120 0.78427 1.19082 1.22265 1.14733 1.22849 0.72318 0.88089 0.88792 1.90407 1.41295 1.18822 1.85806 1.21239 1.09439 0.96558 0.94960 1.21725 0.95232 0.91228 1.00104 1.21566 1.00029 1.02003 0.91856 1.21734 0.93757 0.93141 0.99561 1.21685 1.03505 0.95327 0.97580 1.19152 0.96024 0.83194 0.92527 1.84647 1.37451 1.18931 1.90540 0.93091 0.90375 0.94236 0.92287 0.83977 0.81593 0.81091 0.82842 0.73737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 8.65 71.98 0.62 -5.15 15 2 C -0.03 -1.59 1.67 -12.29 -0.02 -1.61 15 3 H 0.07 3.08 5.52 -2.39 -0.01 3.07 15 4 C -0.52 -31.73 8.90 25.60 0.23 -31.50 15 5 H 0.02 1.58 7.38 -2.91 -0.02 1.56 15 6 C 0.01 0.47 5.45 84.65 0.46 0.93 15 7 N -0.95 -61.36 13.96 21.45 0.30 -61.06 15 8 Si 0.96 43.33 24.37 68.60 1.67 45.01 15 9 H -0.26 -11.43 6.87 99.48 0.68 -10.75 15 10 H -0.30 -13.29 7.11 99.48 0.71 -12.58 15 11 H -0.22 -8.63 6.53 99.48 0.65 -7.98 15 12 C 0.40 18.46 6.16 27.92 0.17 18.63 15 13 O -0.49 -26.21 14.77 17.87 0.26 -25.94 15 14 C -0.22 -7.81 5.88 -20.07 -0.12 -7.93 15 15 C -0.06 -1.75 9.36 22.57 0.21 -1.54 15 16 C -0.14 -2.53 10.02 22.23 0.22 -2.31 15 17 C -0.06 -1.06 10.03 22.32 0.22 -0.83 15 18 C -0.16 -3.56 9.97 22.34 0.22 -3.33 15 19 C 0.14 4.30 6.73 22.92 0.15 4.46 15 20 O -0.50 -17.13 11.58 -68.08 -0.79 -17.92 15 21 H 0.05 2.10 3.27 -2.39 -0.01 2.10 15 22 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 23 H 0.04 1.77 8.14 -2.38 -0.02 1.75 15 24 H 0.27 15.99 8.31 -92.71 -0.77 15.22 15 25 H 0.14 3.64 6.36 -2.91 -0.02 3.62 15 26 H 0.17 1.83 8.06 -2.91 -0.02 1.81 15 27 H 0.17 1.36 8.06 -2.91 -0.02 1.34 15 28 H 0.15 2.56 8.06 -2.91 -0.02 2.53 15 29 H 0.40 10.96 9.06 -74.06 -0.67 10.29 15 Total: -1.00 -79.82 248.35 4.26 -75.56 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.43 Total: 14.53 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 2.38 Total: -30.18 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.30 Total: -61.06 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.52 Total: -43.86 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.67 Total: 45.01 kcal Total: -79.82 4.26 -75.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031990373.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.457 kcal (2) G-P(sol) polarization free energy of solvation -79.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds