Wall clock time and date at job start Mon Mar 30 2020 02:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47306 * 26.72196 * 3 2 1 5 5 C 1.50697 * 109.47466 * 179.97438 * 4 3 2 6 6 C 1.46976 * 126.75889 * 269.68901 * 5 4 3 7 7 C 1.41345 * 127.10950 * 359.97438 * 6 5 4 8 8 H 1.08005 * 120.00028 * 359.97438 * 7 6 5 9 9 C 1.39668 * 120.00265 * 180.02562 * 7 6 5 10 10 N 1.31056 * 119.99746 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00279 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47431 * 59.99843 * 11 9 7 13 13 H 1.48503 * 109.47259 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47221 * 299.99543 * 11 9 7 15 15 C 1.39265 * 105.77707 * 179.83966 * 6 5 4 16 16 N 1.34919 * 107.92861 * 0.42029 * 15 6 5 17 17 H 0.96996 * 124.79090 * 179.74474 * 16 15 6 18 18 C 1.34326 * 126.75640 * 90.00075 * 5 4 3 19 19 C 1.50707 * 125.30226 * 359.97438 * 18 5 4 20 20 O 1.42895 * 109.46752 * 180.02562 * 19 18 5 21 21 H 1.09002 * 109.47132 * 146.72353 * 3 2 1 22 22 H 1.09001 * 109.47213 * 266.72382 * 3 2 1 23 23 H 1.09002 * 109.47153 * 300.00144 * 4 3 2 24 24 H 1.08998 * 109.47533 * 59.99773 * 4 3 2 25 25 H 0.97005 * 119.99786 * 180.02562 * 10 9 7 26 26 H 1.08002 * 126.03893 * 180.18268 * 15 6 5 27 27 H 1.09000 * 109.47170 * 299.99982 * 19 18 5 28 28 H 1.08999 * 109.46790 * 60.00518 * 19 18 5 29 29 H 0.96705 * 113.99705 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.2875 -0.6486 5 6 4.6256 -1.2866 -0.6492 6 6 5.5045 -0.7624 -1.7042 7 6 5.1109 -0.1594 -2.9205 8 1 4.0622 -0.0457 -3.1523 9 6 6.0782 0.2886 -3.8230 10 7 7.3507 0.1502 -3.5419 11 14 5.5580 1.0850 -5.4307 12 1 4.7471 2.2954 -5.1439 13 1 6.7649 1.4704 -6.2054 14 1 4.7487 0.1227 -6.2207 15 6 6.8051 -0.9800 -1.2564 16 7 6.7341 -1.5857 -0.0529 17 1 7.5005 -1.8525 0.4785 18 6 5.4301 -1.7699 0.3118 19 6 4.9668 -2.4142 1.5930 20 8 6.1024 -2.8034 2.3682 21 1 2.9710 0.8600 -0.5639 22 1 2.9714 0.0596 1.0260 23 1 2.7557 -2.1468 -0.0848 24 1 2.7554 -1.3465 -1.6746 25 1 8.0225 0.4616 -4.1685 26 1 7.7107 -0.7146 -1.7816 27 1 4.3661 -1.7035 2.1606 28 1 4.3662 -3.2937 1.3608 29 1 5.8787 -3.2264 3.2085 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032189982.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:40 Heat of formation + Delta-G solvation = -20.564598 kcal Electronic energy + Delta-G solvation = -14251.729177 eV Core-core repulsion = 11753.088225 eV Total energy + Delta-G solvation = -2498.640951 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.99078 -37.76387 -37.38973 -35.15720 -34.62143 -30.82064 -30.35535 -27.28558 -25.57627 -24.32139 -21.24246 -19.21602 -18.35699 -18.21840 -17.79302 -17.45432 -16.16363 -15.87246 -15.74325 -14.74954 -14.48345 -14.20690 -14.03117 -13.82135 -13.63431 -12.97309 -12.81741 -12.68349 -12.53165 -12.41015 -12.29321 -11.78560 -11.44019 -11.15578 -11.06623 -10.91181 -8.94332 -8.22539 -8.20747 -5.84914 1.44679 1.47545 1.56403 1.80060 1.90788 2.09215 2.40173 2.48056 3.16483 3.29742 3.61960 3.77529 4.33357 4.49428 4.59916 4.70142 4.79606 4.86881 5.05637 5.21546 5.37457 5.47752 5.56971 5.96648 6.18023 6.32929 6.67769 6.71334 7.01370 7.15585 7.36858 7.54993 7.64057 8.78194 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.010679 C = 0.007029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.375646 B = 2621.330701 C = 3982.552416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.245 3.755 3 C -0.013 4.013 4 C -0.012 4.012 5 C -0.235 4.235 6 C -0.017 4.017 7 C -0.452 4.452 8 H 0.066 0.934 9 C 0.011 3.989 10 N -0.869 5.869 11 Si 0.971 3.029 12 H -0.266 1.266 13 H -0.281 1.281 14 H -0.270 1.270 15 C -0.135 4.135 16 N -0.552 5.552 17 H 0.403 0.597 18 C 0.000 4.000 19 C 0.156 3.844 20 O -0.594 6.594 21 H 0.106 0.894 22 H 0.130 0.870 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.270 0.730 26 H 0.161 0.839 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -3.012 9.018 9.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.071 4.071 3 C -0.053 4.053 4 C -0.052 4.052 5 C -0.246 4.246 6 C -0.022 4.022 7 C -0.486 4.486 8 H 0.084 0.916 9 C -0.194 4.194 10 N -0.503 5.503 11 Si 0.796 3.204 12 H -0.191 1.191 13 H -0.206 1.206 14 H -0.195 1.195 15 C -0.264 4.264 16 N -0.148 5.148 17 H 0.238 0.762 18 C -0.114 4.114 19 C 0.078 3.922 20 O -0.403 6.403 21 H 0.124 0.876 22 H 0.148 0.852 23 H 0.097 0.903 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.178 0.822 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.589 -2.719 8.449 9.573 hybrid contribution 0.698 0.118 -0.487 0.859 sum -2.891 -2.600 7.962 8.861 Atomic orbital electron populations 1.81173 1.14505 1.11066 1.11523 1.29772 0.95523 0.91010 0.90837 1.19452 0.78734 1.01574 1.05564 1.19440 0.90115 0.95503 1.00108 1.20008 0.93709 1.13825 0.97018 1.18635 0.90796 0.98996 0.93780 1.18974 0.93424 1.34779 1.01446 0.91565 1.26335 0.94581 0.96286 1.02215 1.69644 1.01422 1.42523 1.36664 0.85396 0.77895 0.78962 0.78182 1.19116 1.20576 1.19546 1.22976 1.00476 1.13456 0.89477 1.41172 1.06579 1.49638 1.17456 0.76245 1.19998 0.84387 1.08844 0.98168 1.20589 0.87117 0.97714 0.86759 1.86363 1.34165 1.82541 1.37240 0.87563 0.85173 0.90270 0.93029 0.91994 0.82226 0.90189 0.91224 0.74772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.80 18.54 20.01 0.37 -16.43 15 2 C 0.24 6.98 15.43 89.44 1.38 8.36 15 3 C -0.01 -0.34 5.68 28.79 0.16 -0.18 15 4 C -0.01 -0.39 5.37 29.85 0.16 -0.23 15 5 C -0.23 -9.60 5.61 -18.47 -0.10 -9.70 15 6 C -0.02 -0.86 6.12 -19.98 -0.12 -0.98 15 7 C -0.45 -24.28 9.34 23.38 0.22 -24.06 15 8 H 0.07 3.40 7.70 -2.91 -0.02 3.38 15 9 C 0.01 0.59 5.49 85.15 0.47 1.06 15 10 N -0.87 -47.33 10.38 21.79 0.23 -47.10 15 11 Si 0.97 41.13 29.56 68.60 2.03 43.16 15 12 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 13 H -0.28 -11.56 7.11 99.48 0.71 -10.85 15 14 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 15 C -0.14 -6.92 10.94 84.47 0.92 -6.00 15 16 N -0.55 -23.31 5.78 -180.63 -1.04 -24.36 15 17 H 0.40 15.11 8.49 -92.71 -0.79 14.33 15 18 C 0.00 0.00 6.92 40.92 0.28 0.28 15 19 C 0.16 3.92 7.05 71.24 0.50 4.42 15 20 O -0.59 -13.95 13.09 -148.98 -1.95 -15.90 15 21 H 0.11 3.05 8.14 -2.39 -0.02 3.03 15 22 H 0.13 2.66 8.14 -2.39 -0.02 2.64 15 23 H 0.08 2.07 7.87 -2.39 -0.02 2.05 15 24 H 0.05 1.82 8.00 -2.39 -0.02 1.80 15 25 H 0.27 13.75 8.30 -92.70 -0.77 12.98 15 26 H 0.16 8.88 5.78 -2.91 -0.02 8.86 15 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 15 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 29 H 0.40 4.71 9.12 -74.05 -0.68 4.04 15 Total: -1.00 -66.34 264.47 3.24 -63.10 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.27 Total: 24.56 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.87 Total: -27.03 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -0.45 Total: -87.88 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -1.95 Total: -15.90 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -66.34 3.24 -63.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032189982.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.533 kcal (2) G-P(sol) polarization free energy of solvation -66.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds