Wall clock time and date at job start Mon Mar 30 2020 02:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48503 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46790 * 300.00168 * 3 2 1 6 6 H 1.48498 * 109.46978 * 59.99976 * 3 2 1 7 7 C 1.37881 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99933 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.38881 * 120.00272 * 180.02562 * 10 9 7 12 12 C 1.38953 * 120.17500 * 5.55558 * 11 10 9 13 13 C 1.37955 * 120.06792 * 179.97438 * 12 11 10 14 14 C 1.38616 * 120.41957 * 0.02562 * 13 12 11 15 15 C 1.37751 * 120.35068 * 359.97438 * 14 13 12 16 16 C 1.39731 * 119.92735 * 0.02562 * 15 14 13 17 17 C 1.47437 * 120.20595 * 179.97438 * 16 15 14 18 18 N 1.34777 * 119.99761 * 354.10761 * 17 16 15 19 19 O 1.21597 * 119.99742 * 174.10815 * 17 16 15 20 20 H 0.96998 * 119.99968 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.47360 * 60.00684 * 9 7 2 22 22 H 1.09000 * 109.47515 * 300.00125 * 9 7 2 23 23 H 0.97002 * 120.00001 * 359.97438 * 10 9 7 24 24 H 1.08004 * 119.96697 * 0.25758 * 12 11 10 25 25 H 1.07995 * 119.78801 * 180.02562 * 13 12 11 26 26 H 1.07996 * 119.82058 * 179.97438 * 14 13 12 27 27 H 1.07998 * 120.02956 * 180.02562 * 15 14 13 28 28 H 0.97000 * 120.00426 * 359.97438 * 18 17 16 29 29 H 0.96999 * 119.99657 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7401 -4.9220 -0.0011 12 6 0.3801 -5.1820 -0.1179 13 6 -0.0772 -6.4836 -0.1187 14 6 0.8125 -7.5402 -0.0029 15 6 2.1643 -7.3022 0.1139 16 6 2.6434 -5.9897 0.1164 17 6 4.0890 -5.7279 0.2416 18 7 4.9406 -6.7466 0.4731 19 8 4.5127 -4.5931 0.1360 20 1 -0.4850 0.8400 -0.0004 21 1 0.6240 -2.5568 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 3.1567 -3.4354 -0.0009 24 1 -0.3192 -4.3645 -0.2128 25 1 -1.1351 -6.6805 -0.2102 26 1 0.4439 -8.5553 -0.0042 27 1 2.8529 -8.1294 0.2034 28 1 4.6026 -7.6518 0.5577 29 1 5.8917 -6.5744 0.5551 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033432810.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:57 Heat of formation + Delta-G solvation = -41.253392 kcal Electronic energy + Delta-G solvation = -14275.960422 eV Core-core repulsion = 11776.422337 eV Total energy + Delta-G solvation = -2499.538085 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.23214 -39.11065 -36.86701 -34.94788 -34.39282 -31.77666 -30.78817 -28.19395 -25.03321 -24.75645 -22.18633 -21.68567 -19.23537 -18.61917 -17.80624 -17.39697 -16.88805 -16.08051 -15.92155 -15.76261 -15.06287 -14.96336 -14.58003 -14.19550 -13.97173 -13.38331 -12.97972 -12.79249 -12.75157 -12.35395 -11.89756 -11.51303 -11.16064 -10.85582 -10.71197 -10.60260 -9.85112 -8.35694 -8.21966 -6.49342 0.08862 0.82354 1.35889 1.36734 1.51281 1.96067 2.31459 2.66892 2.93093 2.97903 3.10232 3.99088 4.04461 4.28879 4.59642 4.64632 4.74287 4.97470 5.08478 5.21238 5.33955 5.48812 5.53281 5.72134 5.82730 5.92822 6.11143 6.40180 6.52967 6.73355 7.11326 7.23373 7.48337 8.76374 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.034355 B = 0.007671 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.822075 B = 3649.167215 C = 4444.742685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.978 3.022 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.562 4.562 8 H 0.056 0.944 9 C 0.264 3.736 10 N -0.722 5.722 11 C 0.247 3.753 12 C -0.242 4.242 13 C -0.034 4.034 14 C -0.199 4.199 15 C -0.022 4.022 16 C -0.268 4.268 17 C 0.566 3.434 18 N -0.825 5.825 19 O -0.600 6.600 20 H 0.272 0.728 21 H -0.002 1.002 22 H -0.004 1.004 23 H 0.407 0.593 24 H 0.103 0.897 25 H 0.148 0.852 26 H 0.163 0.837 27 H 0.166 0.834 28 H 0.418 0.582 29 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 -17.734 0.767 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.801 3.199 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.600 4.600 8 H 0.074 0.926 9 C 0.141 3.859 10 N -0.354 5.354 11 C 0.133 3.867 12 C -0.265 4.265 13 C -0.053 4.053 14 C -0.219 4.219 15 C -0.041 4.041 16 C -0.277 4.277 17 C 0.356 3.644 18 N -0.389 5.389 19 O -0.483 6.483 20 H 0.080 0.920 21 H 0.016 0.984 22 H 0.014 0.986 23 H 0.253 0.747 24 H 0.121 0.879 25 H 0.166 0.834 26 H 0.180 0.820 27 H 0.184 0.816 28 H 0.251 0.749 29 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.981 -16.667 0.684 17.149 hybrid contribution 0.602 1.088 0.040 1.244 sum 4.583 -15.579 0.724 16.255 Atomic orbital electron populations 1.70057 1.07561 1.28575 1.49821 1.25881 0.95924 1.03186 0.93651 0.85216 0.78498 0.77783 0.78389 1.19387 1.19501 1.19513 1.21544 0.93483 0.91733 1.53244 0.92551 1.18696 0.88810 0.84213 0.94210 1.46192 1.11589 1.02839 1.74731 1.18523 0.93667 0.85011 0.89476 1.20845 0.93114 0.98983 1.13528 1.21408 1.01267 0.90758 0.91917 1.21160 0.92517 0.99987 1.08283 1.21381 0.96963 0.93415 0.92300 1.19364 0.91624 0.94524 1.22229 1.18390 0.86998 0.84464 0.74590 1.43347 1.10653 1.10275 1.74667 1.90499 1.79123 1.24113 1.54586 0.91950 0.98395 0.98608 0.74724 0.87931 0.83395 0.81973 0.81638 0.74910 0.75747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.00 13.29 21.45 0.28 -55.72 15 2 C 0.01 0.81 5.46 84.66 0.46 1.27 15 3 Si 0.98 45.65 29.54 68.60 2.03 47.68 15 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 5 H -0.27 -12.02 7.11 99.48 0.71 -11.32 15 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 7 C -0.56 -34.31 9.28 25.60 0.24 -34.07 15 8 H 0.06 3.45 7.60 -2.91 -0.02 3.43 15 9 C 0.26 15.33 4.69 85.63 0.40 15.73 15 10 N -0.72 -37.22 5.58 -342.54 -1.91 -39.13 15 11 C 0.25 10.62 6.65 38.71 0.26 10.87 15 12 C -0.24 -9.40 9.30 22.37 0.21 -9.19 15 13 C -0.03 -0.96 10.03 22.29 0.22 -0.73 15 14 C -0.20 -4.32 10.02 22.24 0.22 -4.09 15 15 C -0.02 -0.50 9.52 22.52 0.21 -0.28 15 16 C -0.27 -9.10 5.89 -19.98 -0.12 -9.22 15 17 C 0.57 19.02 8.02 86.67 0.69 19.72 15 18 N -0.83 -16.24 8.82 -175.88 -1.55 -17.79 15 19 O -0.60 -26.54 14.48 -4.02 -0.06 -26.59 15 20 H 0.27 15.23 8.31 -92.71 -0.77 14.46 15 21 H 0.00 -0.11 7.72 -2.38 -0.02 -0.12 15 22 H 0.00 -0.24 8.13 -2.39 -0.02 -0.26 15 23 H 0.41 21.74 4.83 -94.60 -0.46 21.28 15 24 H 0.10 4.46 6.72 -2.91 -0.02 4.44 15 25 H 0.15 3.14 8.06 -2.91 -0.02 3.12 15 26 H 0.16 2.12 8.06 -2.91 -0.02 2.10 15 27 H 0.17 1.99 6.45 -2.91 -0.02 1.97 15 28 H 0.42 4.71 6.89 -92.71 -0.64 4.08 15 29 H 0.41 6.87 8.93 -92.71 -0.83 6.05 15 Total: -1.00 -76.27 253.58 0.88 -75.39 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.72 Total: 26.16 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 2.81 Total: -9.99 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -3.18 Total: -112.64 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.06 Total: -26.59 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -76.27 0.88 -75.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033432810.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.140 kcal (2) G-P(sol) polarization free energy of solvation -76.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds