Wall clock time and date at job start Mon Mar 30 2020 02:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.39039 * 120.00086 * 179.97438 * 10 9 7 12 12 C 1.39215 * 119.93178 * 359.73108 * 11 10 9 13 13 C 1.37619 * 120.06799 * 179.71889 * 12 11 10 14 14 C 1.39797 * 119.92719 * 0.56903 * 13 12 11 15 15 C 1.47522 * 120.06183 * 179.67817 * 14 13 12 16 16 N 1.34765 * 120.00571 * 0.02628 * 15 14 13 17 17 O 1.21602 * 119.98990 * 180.02562 * 15 14 13 18 18 C 1.39792 * 119.86423 * 359.70476 * 14 13 12 19 19 C 1.37607 * 119.93128 * 359.97438 * 18 14 13 20 20 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 22 22 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 23 23 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 24 24 H 1.07999 * 119.97059 * 359.97438 * 12 11 10 25 25 H 1.07998 * 120.03051 * 180.27272 * 13 12 11 26 26 H 0.97000 * 120.00133 * 359.97438 * 16 15 14 27 27 H 0.97003 * 120.00417 * 180.02562 * 16 15 14 28 28 H 1.07999 * 120.03548 * 179.97438 * 18 14 13 29 29 H 1.08002 * 119.96473 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7395 -4.9236 0.0011 12 6 0.3705 -5.1763 0.0073 13 6 -0.0913 -6.4727 0.0020 14 6 0.8159 -7.5363 0.0024 15 6 0.3240 -8.9271 0.0039 16 7 -1.0009 -9.1734 0.0043 17 8 1.1143 -9.8513 0.0047 18 6 2.1899 -7.2792 0.0019 19 6 2.6455 -5.9807 0.0006 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 3.1567 -3.4354 0.0009 24 1 -0.3298 -4.3542 0.0121 25 1 -1.1535 -6.6680 0.0023 26 1 -1.6313 -8.4361 0.0040 27 1 -1.3243 -10.0879 0.0057 28 1 2.8932 -8.0988 0.0027 29 1 3.7070 -5.7815 -0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033432811.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:59 Heat of formation + Delta-G solvation = -25.343155 kcal Electronic energy + Delta-G solvation = -13779.619329 eV Core-core repulsion = 11280.771164 eV Total energy + Delta-G solvation = -2498.848165 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.70770 -38.17566 -35.06516 -33.60527 -32.68879 -30.53334 -29.34661 -26.67110 -23.46479 -22.77100 -21.40055 -19.98259 -18.04440 -17.22794 -16.59195 -15.82042 -15.11161 -14.69851 -14.46135 -14.29050 -13.54180 -13.39651 -13.01195 -12.98253 -12.12742 -12.05884 -11.86806 -11.00955 -11.00602 -10.61661 -10.25183 -9.80047 -9.63184 -9.56907 -9.53515 -8.69147 -8.60584 -6.79134 -6.31344 -4.37578 1.47461 1.84956 3.18030 3.23150 3.24696 3.26970 3.75701 4.13518 4.36053 4.38498 5.06251 5.12999 5.22807 5.35869 5.70499 5.91461 6.05133 6.37032 6.65955 6.69953 6.78012 6.90759 6.93422 7.24310 7.25610 7.50091 7.53322 7.80759 8.06140 8.46246 8.47495 8.73659 9.29376 10.79064 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.074470 B = 0.005058 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.900406 B = 5534.602624 C = 5895.357947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.245 3.755 10 N -0.713 5.713 11 C 0.262 3.738 12 C -0.214 4.214 13 C -0.030 4.030 14 C -0.239 4.239 15 C 0.574 3.426 16 N -0.860 5.860 17 O -0.563 6.563 18 C -0.004 4.004 19 C -0.230 4.230 20 H 0.268 0.732 21 H 0.025 0.975 22 H 0.026 0.974 23 H 0.395 0.605 24 H 0.131 0.869 25 H 0.117 0.883 26 H 0.399 0.601 27 H 0.398 0.602 28 H 0.126 0.874 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.505 -10.299 0.009 10.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.124 3.876 10 N -0.332 5.332 11 C 0.148 3.852 12 C -0.237 4.237 13 C -0.050 4.050 14 C -0.246 4.246 15 C 0.363 3.637 16 N -0.423 5.423 17 O -0.443 6.443 18 C -0.024 4.024 19 C -0.253 4.253 20 H 0.077 0.923 21 H 0.043 0.957 22 H 0.043 0.957 23 H 0.229 0.771 24 H 0.149 0.851 25 H 0.134 0.866 26 H 0.229 0.771 27 H 0.228 0.772 28 H 0.144 0.856 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.178 -10.368 0.008 10.435 hybrid contribution 0.204 1.103 -0.002 1.121 sum -0.973 -9.265 0.007 9.316 Atomic orbital electron populations 1.69923 1.06097 1.27658 1.48852 1.24924 0.94966 0.99526 0.94438 0.86442 0.79451 0.82069 0.78826 1.20000 1.20966 1.19993 1.21136 0.93383 0.90323 1.53404 0.91908 1.19245 0.88684 0.82589 0.97039 1.45640 1.10197 1.02846 1.74518 1.18298 0.93005 0.85700 0.88157 1.20675 0.94123 0.97087 1.11842 1.20886 0.98003 0.91885 0.94223 1.19291 0.94497 0.91568 1.19197 1.18297 0.81965 0.89204 0.74230 1.43770 1.07621 1.11808 1.79095 1.90754 1.55537 1.46425 1.51590 1.20795 0.94053 0.95940 0.91637 1.20517 0.98784 0.91649 1.14344 0.92266 0.95676 0.95666 0.77112 0.85104 0.86559 0.77130 0.77225 0.85645 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 13.29 55.43 0.74 -23.84 15 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 7 C -0.54 -14.11 9.28 -34.44 -0.32 -14.43 15 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 15 9 C 0.25 5.86 4.65 -5.19 -0.02 5.84 15 10 N -0.71 -14.15 5.70 -59.81 -0.34 -14.49 15 11 C 0.26 4.74 6.65 -83.86 -0.56 4.19 15 12 C -0.21 -3.69 9.28 -39.44 -0.37 -4.06 15 13 C -0.03 -0.44 9.53 -39.22 -0.37 -0.81 15 14 C -0.24 -3.70 5.88 -104.95 -0.62 -4.32 15 15 C 0.57 8.59 8.03 -12.48 -0.10 8.49 15 16 N -0.86 -8.82 8.82 30.45 0.27 -8.55 15 17 O -0.56 -10.35 17.17 5.28 0.09 -10.26 15 18 C 0.00 -0.07 9.58 -39.23 -0.38 -0.44 15 19 C -0.23 -3.70 9.87 -39.45 -0.39 -4.09 15 20 H 0.27 7.00 8.31 -40.82 -0.34 6.67 15 21 H 0.03 0.65 7.94 -51.93 -0.41 0.23 15 22 H 0.03 0.65 7.92 -51.93 -0.41 0.24 15 23 H 0.40 7.24 8.32 -40.82 -0.34 6.90 15 24 H 0.13 2.36 6.70 -52.49 -0.35 2.01 15 25 H 0.12 1.27 6.39 -52.49 -0.34 0.93 15 26 H 0.40 3.13 6.85 -40.82 -0.28 2.85 15 27 H 0.40 3.37 8.93 -40.82 -0.36 3.00 15 28 H 0.13 1.89 7.64 -52.49 -0.40 1.49 15 29 H 0.12 1.71 8.06 -52.49 -0.42 1.29 15 LS Contribution 258.70 15.07 3.90 3.90 Total: -1.00 -30.04 258.70 -6.44 -36.48 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -2.85 Total: 9.57 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -3.22 Total: -8.00 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.66 Total: -46.88 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.04 -6.44 -36.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033432811.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.140 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds