Wall clock time and date at job start Mon Mar 30 2020 02:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.39039 * 120.00086 * 179.97438 * 10 9 7 12 12 C 1.39215 * 119.93178 * 359.73108 * 11 10 9 13 13 C 1.37619 * 120.06799 * 179.71889 * 12 11 10 14 14 C 1.39797 * 119.92719 * 0.56903 * 13 12 11 15 15 C 1.47522 * 120.06183 * 179.67817 * 14 13 12 16 16 N 1.34765 * 120.00571 * 0.02628 * 15 14 13 17 17 O 1.21602 * 119.98990 * 180.02562 * 15 14 13 18 18 C 1.39792 * 119.86423 * 359.70476 * 14 13 12 19 19 C 1.37607 * 119.93128 * 359.97438 * 18 14 13 20 20 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 22 22 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 23 23 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 24 24 H 1.07999 * 119.97059 * 359.97438 * 12 11 10 25 25 H 1.07998 * 120.03051 * 180.27272 * 13 12 11 26 26 H 0.97000 * 120.00133 * 359.97438 * 16 15 14 27 27 H 0.97003 * 120.00417 * 180.02562 * 16 15 14 28 28 H 1.07999 * 120.03548 * 179.97438 * 18 14 13 29 29 H 1.08002 * 119.96473 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7395 -4.9236 0.0011 12 6 0.3705 -5.1763 0.0073 13 6 -0.0913 -6.4727 0.0020 14 6 0.8159 -7.5363 0.0024 15 6 0.3240 -8.9271 0.0039 16 7 -1.0009 -9.1734 0.0043 17 8 1.1143 -9.8513 0.0047 18 6 2.1899 -7.2792 0.0019 19 6 2.6455 -5.9807 0.0006 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 3.1567 -3.4354 0.0009 24 1 -0.3298 -4.3542 0.0121 25 1 -1.1535 -6.6680 0.0023 26 1 -1.6313 -8.4361 0.0040 27 1 -1.3243 -10.0879 0.0057 28 1 2.8932 -8.0988 0.0027 29 1 3.7070 -5.7815 -0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033432811.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:59 Heat of formation + Delta-G solvation = -47.517045 kcal Electronic energy + Delta-G solvation = -13780.580861 eV Core-core repulsion = 11280.771164 eV Total energy + Delta-G solvation = -2499.809697 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.95973 -39.49495 -36.63676 -34.84998 -34.42302 -31.81605 -30.88137 -28.38160 -25.16461 -24.07952 -22.84916 -21.25344 -19.35762 -18.77775 -17.74451 -17.43046 -16.85709 -15.91734 -15.85596 -15.68745 -15.06935 -14.88094 -14.51362 -14.22266 -13.95991 -13.43623 -13.41530 -12.76724 -12.73037 -12.23978 -11.79097 -11.46870 -11.16548 -11.05704 -10.64183 -10.54922 -9.91982 -8.31785 -8.27122 -6.45162 0.18881 0.56231 1.42133 1.43866 1.52072 2.02410 2.33170 2.72948 2.81382 3.03390 3.08251 3.94037 4.06588 4.13849 4.47035 4.63151 4.70177 5.02673 5.10934 5.27993 5.34765 5.45593 5.48925 5.53801 5.82984 5.94996 6.01889 6.40247 6.53544 6.68916 7.04901 7.27508 7.42097 8.79376 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.074470 B = 0.005058 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.900406 B = 5534.602624 C = 5895.357947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.562 4.562 8 H 0.071 0.929 9 C 0.266 3.734 10 N -0.721 5.721 11 C 0.239 3.761 12 C -0.231 4.231 13 C -0.017 4.017 14 C -0.237 4.237 15 C 0.573 3.427 16 N -0.834 5.834 17 O -0.600 6.600 18 C -0.013 4.013 19 C -0.221 4.221 20 H 0.270 0.730 21 H 0.000 1.000 22 H 0.000 1.000 23 H 0.401 0.599 24 H 0.116 0.884 25 H 0.156 0.844 26 H 0.414 0.586 27 H 0.411 0.589 28 H 0.134 0.866 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 -10.942 0.009 11.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.599 4.599 8 H 0.089 0.911 9 C 0.144 3.856 10 N -0.343 5.343 11 C 0.128 3.872 12 C -0.254 4.254 13 C -0.036 4.036 14 C -0.243 4.243 15 C 0.361 3.639 16 N -0.398 5.398 17 O -0.483 6.483 18 C -0.033 4.033 19 C -0.244 4.244 20 H 0.079 0.921 21 H 0.018 0.982 22 H 0.018 0.982 23 H 0.236 0.764 24 H 0.134 0.866 25 H 0.173 0.827 26 H 0.246 0.754 27 H 0.243 0.757 28 H 0.152 0.848 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.116 -11.058 0.008 11.114 hybrid contribution 0.094 1.127 -0.002 1.131 sum -1.022 -9.931 0.007 9.984 Atomic orbital electron populations 1.70044 1.07666 1.28593 1.49850 1.25848 0.95800 1.03202 0.93948 0.85362 0.78144 0.77537 0.79160 1.19214 1.20713 1.19201 1.21556 0.94030 0.91328 1.53022 0.91124 1.18703 0.88704 0.83620 0.94615 1.45257 1.09678 1.02648 1.76699 1.18544 0.93846 0.85303 0.89457 1.20753 0.93795 0.97953 1.12945 1.21165 0.99950 0.90283 0.92226 1.19550 0.94643 0.92315 1.17822 1.18228 0.83106 0.88343 0.74204 1.43543 1.06211 1.13302 1.76768 1.90747 1.56846 1.47135 1.53549 1.21000 0.94744 0.95966 0.91544 1.20663 0.99490 0.91113 1.13143 0.92148 0.98217 0.98198 0.76428 0.86643 0.82666 0.75390 0.75708 0.84829 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.01 13.29 21.45 0.28 -51.73 15 2 C 0.01 0.66 5.46 84.65 0.46 1.12 15 3 Si 0.97 41.28 29.54 68.60 2.03 43.30 15 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 15 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 7 C -0.56 -29.47 9.28 25.60 0.24 -29.23 15 8 H 0.07 3.50 7.60 -2.91 -0.02 3.48 15 9 C 0.27 13.16 4.65 85.63 0.40 13.56 15 10 N -0.72 -29.09 5.70 -343.13 -1.96 -31.05 15 11 C 0.24 8.64 6.65 38.47 0.26 8.90 15 12 C -0.23 -7.95 9.28 22.36 0.21 -7.74 15 13 C -0.02 -0.46 9.53 22.50 0.21 -0.24 15 14 C -0.24 -6.85 5.88 -20.08 -0.12 -6.97 15 15 C 0.57 15.75 8.03 86.69 0.70 16.45 15 16 N -0.83 -14.37 8.82 -175.83 -1.55 -15.92 15 17 O -0.60 -21.01 17.17 -4.04 -0.07 -21.08 15 18 C -0.01 -0.38 9.58 22.50 0.22 -0.17 15 19 C -0.22 -6.89 9.87 22.36 0.22 -6.67 15 20 H 0.27 14.29 8.31 -92.71 -0.77 13.52 15 21 H 0.00 0.00 7.94 -2.39 -0.02 -0.02 15 22 H 0.00 0.01 7.92 -2.38 -0.02 -0.01 15 23 H 0.40 14.80 8.32 -92.71 -0.77 14.02 15 24 H 0.12 4.31 6.70 -2.91 -0.02 4.29 15 25 H 0.16 2.86 6.39 -2.91 -0.02 2.84 15 26 H 0.41 4.87 6.85 -92.71 -0.63 4.24 15 27 H 0.41 5.60 8.93 -92.71 -0.83 4.77 15 28 H 0.13 3.83 7.64 -2.91 -0.02 3.81 15 29 H 0.14 3.73 8.06 -2.91 -0.02 3.71 15 Total: -1.00 -64.79 258.70 0.50 -64.29 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -1.03 Total: 23.17 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 2.79 Total: -10.99 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -3.22 Total: -98.70 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.07 Total: -21.08 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -64.79 0.50 -64.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033432811.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.774 kcal (2) G-P(sol) polarization free energy of solvation -64.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds