Wall clock time and date at job start Mon Mar 30 2020 03:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 5 5 C 1.34770 * 119.99955 * 84.99585 * 4 2 1 6 6 O 1.21694 * 120.00226 * 0.02562 * 5 4 2 7 7 C 1.46383 * 119.99921 * 179.97438 * 5 4 2 8 8 H 1.07996 * 120.00176 * 0.02562 * 7 5 4 9 9 C 1.40053 * 119.99575 * 180.02562 * 7 5 4 10 10 N 1.30669 * 120.00650 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99492 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46852 * 89.99903 * 11 9 7 13 13 H 1.48503 * 109.46820 * 209.99762 * 11 9 7 14 14 H 1.48493 * 109.47123 * 330.00169 * 11 9 7 15 15 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 16 16 C 1.38650 * 120.79381 * 79.71475 * 15 2 1 17 17 C 1.38202 * 119.16442 * 179.75420 * 16 15 2 18 18 N 1.31878 * 120.76353 * 0.53547 * 17 16 15 19 19 C 1.31871 * 121.72316 * 359.73869 * 18 17 16 20 20 C 1.38204 * 120.76446 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 0.96997 * 120.00110 * 265.00363 * 4 2 1 25 25 H 0.96994 * 120.00484 * 180.02562 * 10 9 7 26 26 H 1.08001 * 120.41558 * 0.02562 * 16 15 2 27 27 H 1.07999 * 119.62291 * 180.25017 * 17 16 15 28 28 H 1.08000 * 119.61626 * 179.97438 * 19 18 17 29 29 H 1.08001 * 120.41412 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8580 1.1626 -2.4117 7 6 2.6354 -0.7082 -3.5522 8 1 2.8923 -1.7560 -3.5037 9 6 2.7696 -0.0093 -4.7585 10 7 2.4592 1.2586 -4.8171 11 14 3.3922 -0.8900 -6.2837 12 1 2.2421 -1.4610 -7.0297 13 1 4.1155 0.0742 -7.1513 14 1 4.3138 -1.9830 -5.8826 15 6 2.0324 -0.7105 1.2304 16 6 2.0685 -2.0954 1.2853 17 6 2.5405 -2.7120 2.4286 18 7 2.9431 -1.9990 3.4623 19 6 2.9177 -0.6806 3.4475 20 6 2.4641 0.0052 2.3366 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 2.2490 -1.6317 -1.1527 25 1 2.5518 1.7425 -5.6526 26 1 1.7362 -2.6848 0.4436 27 1 2.5757 -3.7903 2.4778 28 1 3.2552 -0.1305 4.3134 29 1 2.4454 1.0851 2.3307 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035693845.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:40 Heat of formation + Delta-G solvation = -35.982783 kcal Electronic energy + Delta-G solvation = -14266.187360 eV Core-core repulsion = 11766.877826 eV Total energy + Delta-G solvation = -2499.309534 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.26177 -39.44677 -36.52364 -34.59718 -32.94876 -32.07846 -30.76707 -28.20923 -25.41040 -24.44552 -22.74717 -21.17716 -19.53668 -17.76920 -17.55538 -16.98680 -16.49232 -15.88992 -15.82683 -15.27750 -14.75256 -14.50886 -14.39901 -14.26322 -13.45918 -13.28594 -12.87875 -12.75902 -12.64032 -12.55835 -12.10405 -12.02060 -10.94198 -10.61201 -10.46338 -10.06980 -9.86108 -9.53096 -8.29855 -6.86570 0.21983 0.25248 1.40341 1.41513 1.56778 2.24062 2.46655 2.84903 3.07805 3.50884 3.62124 3.64919 3.92316 4.16490 4.24443 4.35370 4.42752 4.69231 4.71575 4.86339 4.94584 5.02294 5.23677 5.31399 5.41441 5.77735 5.86546 6.19496 6.25497 6.86304 7.02196 7.51142 8.47905 8.66328 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.046408 B = 0.006614 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.202687 B = 4232.152815 C = 4527.638418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.187 3.813 3 H 0.058 0.942 4 N -0.748 5.748 5 C 0.541 3.459 6 O -0.628 6.628 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.030 3.970 10 N -0.821 5.821 11 Si 0.997 3.003 12 H -0.261 1.261 13 H -0.274 1.274 14 H -0.250 1.250 15 C -0.046 4.046 16 C -0.169 4.169 17 C 0.098 3.902 18 N -0.509 5.509 19 C 0.098 3.902 20 C -0.173 4.173 21 H 0.077 0.923 22 H 0.033 0.967 23 H 0.067 0.933 24 H 0.393 0.607 25 H 0.274 0.726 26 H 0.144 0.856 27 H 0.184 0.816 28 H 0.184 0.816 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -7.546 10.908 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.081 3.919 3 H 0.076 0.924 4 N -0.403 5.403 5 C 0.345 3.655 6 O -0.515 6.515 7 C -0.610 4.610 8 H 0.105 0.895 9 C -0.186 4.186 10 N -0.450 5.450 11 Si 0.816 3.184 12 H -0.186 1.186 13 H -0.199 1.199 14 H -0.173 1.173 15 C -0.055 4.055 16 C -0.189 4.189 17 C -0.058 4.058 18 N -0.219 5.219 19 C -0.058 4.058 20 C -0.193 4.193 21 H 0.096 0.904 22 H 0.052 0.948 23 H 0.086 0.914 24 H 0.228 0.772 25 H 0.084 0.916 26 H 0.162 0.838 27 H 0.201 0.799 28 H 0.201 0.799 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.113 -6.955 11.539 13.473 hybrid contribution -0.105 0.188 -1.567 1.581 sum -0.217 -6.767 9.972 12.054 Atomic orbital electron populations 1.22039 0.94345 1.02347 1.01446 1.19450 0.94283 0.95497 0.82662 0.92428 1.45941 1.72268 1.13328 1.08776 1.18567 0.77557 0.86071 0.83293 1.90556 1.56889 1.18418 1.85634 1.21429 1.47258 0.98286 0.94062 0.89497 1.26948 0.92804 0.95127 1.03680 1.70175 1.36580 1.10493 1.27769 0.85030 0.79036 0.78506 0.75793 1.18579 1.19893 1.17283 1.20492 0.95288 0.94895 0.94791 1.22135 1.01765 0.94273 1.00746 1.23160 0.93138 1.01555 0.87933 1.67734 1.15866 1.08670 1.29598 1.23147 0.94730 0.90093 0.97871 1.22245 1.00626 1.02320 0.94107 0.90416 0.94794 0.91437 0.77200 0.91570 0.83783 0.79942 0.79948 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 9.47 71.98 0.68 -4.27 15 2 C 0.19 7.09 2.81 44.25 0.12 7.21 15 3 H 0.06 2.53 7.48 -2.39 -0.02 2.51 15 4 N -0.75 -32.97 5.03 -450.38 -2.27 -35.24 15 5 C 0.54 30.96 7.71 86.36 0.67 31.63 15 6 O -0.63 -41.50 14.68 -4.33 -0.06 -41.56 15 7 C -0.57 -32.21 9.54 24.83 0.24 -31.97 15 8 H 0.09 4.36 7.85 -2.91 -0.02 4.34 15 9 C 0.03 1.64 5.50 85.31 0.47 2.11 15 10 N -0.82 -49.98 11.83 21.84 0.26 -49.72 15 11 Si 1.00 40.60 29.56 68.60 2.03 42.63 15 12 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 13 H -0.27 -10.82 7.11 99.48 0.71 -10.12 15 14 H -0.25 -9.45 7.11 99.48 0.71 -8.74 15 15 C -0.05 -1.38 4.98 -19.67 -0.10 -1.48 15 16 C -0.17 -4.38 9.15 22.36 0.20 -4.17 15 17 C 0.10 2.28 11.18 84.68 0.95 3.23 15 18 N -0.51 -12.94 10.36 -195.84 -2.03 -14.97 15 19 C 0.10 2.27 11.18 84.68 0.95 3.22 15 20 C -0.17 -4.51 9.78 22.36 0.22 -4.29 15 21 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.39 14.98 6.95 -92.71 -0.64 14.34 15 25 H 0.27 15.13 8.29 -92.71 -0.77 14.37 15 26 H 0.14 3.36 7.03 -2.91 -0.02 3.34 15 27 H 0.18 3.00 8.06 -2.91 -0.02 2.98 15 28 H 0.18 2.99 8.06 -2.91 -0.02 2.97 15 29 H 0.15 3.37 8.06 -2.91 -0.02 3.35 15 Total: -1.00 -74.91 260.28 2.84 -72.07 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.52 Total: 25.57 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 4.40 Total: 1.22 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -4.04 Total: -99.93 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -0.06 Total: -41.56 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -74.91 2.84 -72.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035693845.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.088 kcal (2) G-P(sol) polarization free energy of solvation -74.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds