Wall clock time and date at job start Mon Mar 30 2020 02:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21553 * 119.99965 * 0.02562 * 11 10 9 13 13 C 1.47870 * 120.00001 * 180.02562 * 11 10 9 14 14 C 1.39611 * 120.10744 * 359.73297 * 13 11 10 15 15 C 1.37988 * 120.00261 * 179.70007 * 14 13 11 16 16 C 1.38247 * 120.22576 * 0.58986 * 15 14 13 17 17 C 1.38978 * 120.22049 * 359.68153 * 16 15 14 18 18 N 1.39709 * 120.00084 * 179.97438 * 17 16 15 19 19 C 1.38680 * 119.98887 * 0.02562 * 17 16 15 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 24 24 H 1.08006 * 120.00002 * 359.97438 * 14 13 11 25 25 H 1.08000 * 119.88290 * 180.27855 * 15 14 13 26 26 H 1.07999 * 119.88446 * 179.70612 * 16 15 14 27 27 H 0.97003 * 119.99224 * 180.02562 * 18 17 16 28 28 H 0.96990 * 120.00294 * 0.02719 * 18 17 16 29 29 H 1.08003 * 120.10599 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5585 -5.1054 0.0011 13 6 2.7144 -6.0074 0.0016 14 6 4.0875 -5.7549 -0.0040 15 6 4.9823 -6.8053 0.0028 16 6 4.5242 -8.1097 0.0029 17 6 3.1594 -8.3718 0.0028 18 7 2.7015 -9.6917 0.0024 19 6 2.2521 -7.3229 0.0021 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 3.1566 -3.4355 0.0009 24 1 4.4495 -4.7373 -0.0092 25 1 6.0440 -6.6078 0.0030 26 1 5.2294 -8.9277 0.0034 27 1 1.7488 -9.8745 0.0019 28 1 3.3361 -10.4252 0.0025 29 1 1.1910 -7.5244 0.0025 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036984749.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:21 Heat of formation + Delta-G solvation = -20.160129 kcal Electronic energy + Delta-G solvation = -13860.818794 eV Core-core repulsion = 11362.195382 eV Total energy + Delta-G solvation = -2498.623412 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.68332 -37.99767 -34.50030 -34.14252 -32.30421 -30.87145 -28.69328 -27.10463 -23.92720 -22.17531 -21.96212 -19.71916 -18.00009 -16.81387 -16.28195 -15.78836 -15.20936 -15.06810 -14.34722 -14.26683 -13.63658 -13.52528 -13.03491 -12.81726 -11.97234 -11.78982 -11.65044 -11.10431 -10.97893 -10.86831 -10.57992 -10.29938 -9.39429 -9.12830 -8.81840 -8.70901 -7.85772 -7.55535 -6.14506 -4.21474 1.16591 1.65194 3.27317 3.31833 3.33453 3.43863 3.74787 4.14633 4.28435 4.39788 4.97435 5.06555 5.21531 5.41693 5.44092 5.61516 5.81385 6.00204 6.31662 6.55375 6.62343 6.82860 7.33727 7.42822 7.44955 7.53879 7.68071 7.69179 7.98806 8.64061 8.79476 9.10318 9.44848 10.95742 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.057954 B = 0.005560 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.023738 B = 5034.934565 C = 5502.812288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.703 5.703 11 C 0.537 3.463 12 O -0.553 6.553 13 C -0.073 4.073 14 C -0.146 4.146 15 C -0.081 4.081 16 C -0.185 4.185 17 C 0.203 3.797 18 N -0.881 5.881 19 C -0.142 4.142 20 H 0.266 0.734 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.391 0.609 24 H 0.126 0.874 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.398 0.602 28 H 0.396 0.604 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.761 -15.205 0.004 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.351 5.351 11 C 0.322 3.678 12 O -0.434 6.434 13 C -0.077 4.077 14 C -0.167 4.167 15 C -0.099 4.099 16 C -0.208 4.208 17 C 0.099 3.901 18 N -0.421 5.421 19 C -0.166 4.166 20 H 0.076 0.924 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.225 0.775 24 H 0.144 0.856 25 H 0.142 0.858 26 H 0.137 0.863 27 H 0.227 0.773 28 H 0.224 0.776 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.729 -15.123 0.002 17.461 hybrid contribution 0.774 0.645 0.001 1.008 sum 9.503 -14.478 0.003 17.318 Atomic orbital electron populations 1.69967 1.06113 1.27413 1.48806 1.24950 0.94923 0.99443 0.94681 0.86463 0.79407 0.82261 0.78705 1.20046 1.21078 1.20040 1.21189 0.93260 0.90428 1.53360 0.91896 1.19150 0.88314 0.81827 0.97902 1.46425 1.11319 1.05944 1.71441 1.18318 0.87989 0.83386 0.78067 1.90714 1.16337 1.84999 1.51327 1.20005 0.93654 0.93672 1.00393 1.21161 0.92089 0.99507 1.03933 1.20792 0.99376 0.91816 0.97965 1.20658 0.93190 0.97348 1.09603 1.17658 0.92642 0.85077 0.94715 1.42412 1.10007 1.03744 1.85920 1.20681 0.99593 0.90527 1.05763 0.92386 0.95323 0.95333 0.77467 0.85640 0.85751 0.86316 0.77350 0.77632 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.59 15 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 15 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 15 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 15 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 15 9 C 0.25 6.76 5.43 -5.19 -0.03 6.73 15 10 N -0.70 -15.63 5.50 -62.42 -0.34 -15.98 15 11 C 0.54 11.70 7.77 -12.32 -0.10 11.60 15 12 O -0.55 -14.07 16.35 5.32 0.09 -13.98 15 13 C -0.07 -1.27 5.87 -104.99 -0.62 -1.88 15 14 C -0.15 -2.09 9.54 -39.16 -0.37 -2.47 15 15 C -0.08 -0.95 10.02 -39.67 -0.40 -1.35 15 16 C -0.18 -2.08 9.89 -39.30 -0.39 -2.47 15 17 C 0.20 2.51 6.75 -83.83 -0.57 1.94 15 18 N -0.88 -7.73 9.09 32.39 0.29 -7.44 15 19 C -0.14 -2.21 9.44 -38.97 -0.37 -2.58 15 20 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 21 H 0.03 0.86 8.14 -51.93 -0.42 0.43 15 22 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.39 7.48 6.35 -40.82 -0.26 7.22 15 24 H 0.13 1.64 6.40 -52.48 -0.34 1.31 15 25 H 0.12 1.12 8.06 -52.49 -0.42 0.69 15 26 H 0.12 1.01 8.06 -52.49 -0.42 0.59 15 27 H 0.40 3.07 8.84 -40.82 -0.36 2.71 15 28 H 0.40 2.49 8.84 -40.82 -0.36 2.13 15 29 H 0.13 2.10 7.65 -52.48 -0.40 1.70 15 LS Contribution 260.90 15.07 3.93 3.93 Total: -1.00 -33.00 260.90 -6.51 -39.51 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -2.94 Total: 7.65 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -3.25 Total: -4.08 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.69 Total: -49.01 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.00 -6.51 -39.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036984749.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.345 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds